Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ABLB95_RS13200 Genome accession   NZ_CP157451
Coordinates   2800718..2801377 (-) Length   219 a.a.
NCBI ID   WP_138000910.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain XH1688     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2795718..2806377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB95_RS13180 (ABLB95_13170) aroK 2796701..2797252 (-) 552 WP_005018052.1 shikimate kinase AroK -
  ABLB95_RS13185 (ABLB95_13175) pilQ 2797289..2799469 (-) 2181 WP_348908901.1 type IV pilus secretin PilQ family protein Machinery gene
  ABLB95_RS13190 (ABLB95_13180) pilP 2799487..2800014 (-) 528 WP_005018049.1 pilus assembly protein PilP Machinery gene
  ABLB95_RS13195 (ABLB95_13185) comO 2800011..2800721 (-) 711 WP_005404626.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABLB95_RS13200 (ABLB95_13190) pilN 2800718..2801377 (-) 660 WP_138000910.1 PilN domain-containing protein Machinery gene
  ABLB95_RS13205 (ABLB95_13195) comM 2801377..2802435 (-) 1059 WP_005024205.1 pilus assembly protein PilM Machinery gene
  ABLB95_RS13210 (ABLB95_13200) ponA 2802597..2805143 (+) 2547 WP_034688125.1 penicillin-binding protein PBP1a -
  ABLB95_RS13215 (ABLB95_13205) - 2805190..2805996 (-) 807 WP_034682939.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24259.64 Da        Isoelectric Point: 4.6921

>NTDB_id=1006994 ABLB95_RS13200 WP_138000910.1 2800718..2801377(-) (pilN) [Acinetobacter radioresistens strain XH1688]
MTTINLLPWRDELREQRKKQFIIICIGVALLGLAGVVLTWMYYDRKLDDQEQANQLIISTNQNLDIQLKSLDGLQEQRDA
IIERMNLIQGLQGKRPVTVRLVDELARVIPTNMYLTKFARTGDKFTLEGKAESPNTVAELLRGLEASPWYRNAFMNSFLA
AEEKKEQTPTSLIPRPEENYGSFVVTVDAGEIAADSPPSADPNAPTNTAATGPAAGAAQ

Nucleotide


Download         Length: 660 bp        

>NTDB_id=1006994 ABLB95_RS13200 WP_138000910.1 2800718..2801377(-) (pilN) [Acinetobacter radioresistens strain XH1688]
ATGACAACAATTAACCTGCTCCCTTGGCGTGATGAGCTAAGGGAACAACGGAAAAAGCAATTTATTATTATTTGTATTGG
GGTGGCATTACTAGGTTTAGCCGGAGTAGTACTGACCTGGATGTACTATGACCGCAAGCTGGATGATCAGGAACAAGCTA
ATCAACTGATTATCAGTACTAACCAGAACCTGGATATACAGCTTAAATCTCTAGATGGCCTGCAAGAACAGCGTGATGCC
ATTATTGAGCGCATGAACCTGATTCAGGGCTTACAGGGTAAACGTCCGGTTACTGTTCGTTTGGTGGATGAGCTGGCACG
TGTAATCCCAACCAATATGTATCTGACCAAATTTGCACGGACTGGTGATAAATTTACTCTCGAAGGGAAGGCAGAAAGCC
CGAACACTGTAGCTGAGCTTTTGCGTGGTCTAGAAGCTTCACCTTGGTATCGTAATGCCTTTATGAACTCATTCCTTGCC
GCGGAAGAAAAGAAAGAGCAGACCCCAACTTCGCTGATACCTCGACCAGAAGAAAACTATGGCAGTTTTGTTGTAACTGT
AGATGCAGGTGAGATTGCTGCTGATAGTCCGCCATCGGCTGATCCCAATGCACCAACCAATACAGCAGCAACGGGTCCTG
CAGCGGGAGCAGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

71.364

100

0.717
  comN Acinetobacter baylyi ADP1

68.545

97.26

0.667

Multiple sequence alignment