Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ABLB95_RS00880 Genome accession   NZ_CP157451
Coordinates   178288..179418 (-) Length   376 a.a.
NCBI ID   WP_348908893.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain XH1688     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 173288..184418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB95_RS00850 (ABLB95_00850) - 173400..173741 (-) 342 WP_248114913.1 RcnB family protein -
  ABLB95_RS00855 (ABLB95_00855) - 173936..174478 (-) 543 WP_005023666.1 glutathione peroxidase -
  ABLB95_RS00860 (ABLB95_00860) - 174605..175228 (-) 624 WP_005023665.1 hypothetical protein -
  ABLB95_RS00865 (ABLB95_00865) - 175445..176200 (-) 756 WP_348908892.1 helix-turn-helix transcriptional regulator -
  ABLB95_RS00870 (ABLB95_00870) - 176316..177209 (+) 894 WP_250706329.1 DMT family transporter -
  ABLB95_RS00875 (ABLB95_00875) - 177674..178243 (-) 570 WP_034675551.1 L-threonylcarbamoyladenylate synthase -
  ABLB95_RS00880 (ABLB95_00880) dprA 178288..179418 (-) 1131 WP_348908893.1 DNA-processing protein DprA Machinery gene
  ABLB95_RS00885 (ABLB95_00885) tsaP 179434..180582 (-) 1149 WP_005023661.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABLB95_RS00890 (ABLB95_00890) def 180707..181237 (+) 531 WP_005017251.1 peptide deformylase -
  ABLB95_RS00895 (ABLB95_00895) - 181336..181752 (+) 417 WP_005023660.1 DUF2946 family protein -
  ABLB95_RS00900 (ABLB95_00900) - 181818..183881 (+) 2064 WP_348908894.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41821.65 Da        Isoelectric Point: 6.6994

>NTDB_id=1006957 ABLB95_RS00880 WP_348908893.1 178288..179418(-) (dprA) [Acinetobacter radioresistens strain XH1688]
MIAELSQLHYHSLKLWYLVQHSVSSFNQLVEYFGSAEQATTPAALARWGNLKLHANHSKRAQEFYSATGQAEFEQLTQRV
LASCDFILVPEDILYPQQLHPYTDKPPILFGQGSAQALSQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYITSGLALG
IDEAAHQGALQHQRTIAVVGTGLDLVYPAHNRKLQEQILQYGGTIVSEFLPGTQPLKHHFPRRNRIVSGLSLGVLVAEAA
LESGSLITAQRAADQGKIIFAIPGHIYSEHHQGCHQLIREGAILVDHPEQLIEDLALPTQWHSQQQKVSSVPEPAQVPEH
LFELYQQLDWVGLHLDQIALKLPLPAAELTGHLMELELLGLCVQQSGRYLRCRPGF

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=1006957 ABLB95_RS00880 WP_348908893.1 178288..179418(-) (dprA) [Acinetobacter radioresistens strain XH1688]
ATGATTGCCGAATTATCGCAGCTTCATTATCACAGTCTGAAGCTGTGGTATTTGGTCCAGCATTCAGTTTCAAGTTTTAA
TCAGCTGGTTGAGTATTTTGGTAGTGCTGAACAGGCAACCACTCCGGCAGCATTAGCGCGCTGGGGCAATTTAAAACTGC
ATGCCAATCATTCCAAGCGGGCACAGGAATTTTATAGCGCAACCGGTCAGGCTGAGTTTGAGCAACTGACCCAACGGGTA
CTGGCAAGTTGCGATTTTATTTTAGTGCCGGAAGATATACTGTATCCGCAGCAGCTGCACCCTTATACAGATAAGCCTCC
GATCCTGTTTGGCCAAGGTTCTGCTCAAGCCTTAAGTCAACCCCAGATCGCGATTGTAGGCAGTCGCAAACCAAGCCCGC
ATGGCCGGCAAGTAGCCTACGACTTTGCGTATTATCTGAGTGAAAAAGGGTTTTATATTACCAGTGGACTTGCCTTGGGA
ATTGACGAGGCAGCACATCAAGGGGCATTGCAGCATCAGCGCACTATTGCTGTAGTCGGAACCGGACTGGATCTGGTCTA
TCCAGCCCATAACCGTAAGCTTCAAGAACAGATACTTCAATACGGCGGTACAATTGTCAGTGAGTTTTTACCGGGAACCC
AACCACTCAAGCATCATTTTCCACGCCGTAACCGTATTGTTAGTGGTTTGAGTCTAGGTGTACTGGTGGCAGAAGCCGCT
TTAGAAAGTGGTTCATTGATTACTGCACAGCGTGCGGCCGATCAGGGCAAGATTATTTTTGCCATTCCCGGCCATATCTA
CAGCGAGCATCATCAAGGCTGTCATCAACTCATCCGTGAAGGCGCCATACTGGTAGATCATCCGGAACAGCTGATTGAAG
ATCTGGCTTTACCGACCCAGTGGCACAGCCAGCAACAAAAGGTAAGCAGTGTACCCGAGCCGGCACAGGTACCTGAACAT
CTATTTGAACTGTACCAACAACTAGACTGGGTAGGACTGCATCTAGACCAGATTGCTCTTAAATTGCCATTACCTGCGGC
TGAATTGACCGGACATCTGATGGAACTTGAGTTACTTGGACTATGTGTTCAGCAATCTGGGCGCTATCTGCGTTGCCGTC
CGGGCTTTTAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(324-367)

DNA recombination-mediator protein A (DNA_processg_A)

(87-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

67.989

100

0.684
  dprA Acinetobacter baumannii D1279779

67.989

100

0.684
  dprA Acinetobacter baylyi ADP1

65.526

100

0.662
  dprA Neisseria meningitidis strain C311

38.035

100

0.402
  dprA Neisseria meningitidis MC58

38.035

100

0.402
  dprA Neisseria gonorrhoeae MS11

37.209

100

0.383
  dprA Neisseria gonorrhoeae strain FA1090

36.951

100

0.38
  dprA Vibrio cholerae strain A1552

43.354

84.043

0.364

Multiple sequence alignment