Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ABLB95_RS00885 Genome accession   NZ_CP157451
Coordinates   179434..180582 (-) Length   382 a.a.
NCBI ID   WP_005023661.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain XH1688     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 174434..185582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB95_RS00860 (ABLB95_00860) - 174605..175228 (-) 624 WP_005023665.1 hypothetical protein -
  ABLB95_RS00865 (ABLB95_00865) - 175445..176200 (-) 756 WP_348908892.1 helix-turn-helix transcriptional regulator -
  ABLB95_RS00870 (ABLB95_00870) - 176316..177209 (+) 894 WP_250706329.1 DMT family transporter -
  ABLB95_RS00875 (ABLB95_00875) - 177674..178243 (-) 570 WP_034675551.1 L-threonylcarbamoyladenylate synthase -
  ABLB95_RS00880 (ABLB95_00880) dprA 178288..179418 (-) 1131 WP_348908893.1 DNA-processing protein DprA Machinery gene
  ABLB95_RS00885 (ABLB95_00885) tsaP 179434..180582 (-) 1149 WP_005023661.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABLB95_RS00890 (ABLB95_00890) def 180707..181237 (+) 531 WP_005017251.1 peptide deformylase -
  ABLB95_RS00895 (ABLB95_00895) - 181336..181752 (+) 417 WP_005023660.1 DUF2946 family protein -
  ABLB95_RS00900 (ABLB95_00900) - 181818..183881 (+) 2064 WP_348908894.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 42093.38 Da        Isoelectric Point: 9.4213

>NTDB_id=1006958 ABLB95_RS00885 WP_005023661.1 179434..180582(-) (tsaP) [Acinetobacter radioresistens strain XH1688]
MKKVFKGSALRALGFKKQFIALAICSSLGIIMPGMAEAASRNINPPSLKASAPNVYVVKKGDTLWDIAGKFLSKPWRWPE
IWASNKHVKNPHWIYPGDRLLLCTLDGRPLIGKDEGDGCEGIIRRYGGQTSMQPQVRVESLNNAIPVIPLEHIRVWLERT
LIMSPDSVVNTPYILGTADNRVLAAAGQTVYARGNGLQVGQRYAVYREGEPYIFTDANGKSYNAGVELLQVASGVAVQNE
QDITTLELTQSYNGEVRRGDRVMPEYDPMLPTLFYPTIDHQVTEGGQVIRVMGSIGTAARHSVVTVNRGNIHGVQSGQVF
SVYQQGEVVRDPKTREQIKLPSQKVGNIMIFRTFDQLSYAYVLDSALPIKVGSVIQAPPMAE

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=1006958 ABLB95_RS00885 WP_005023661.1 179434..180582(-) (tsaP) [Acinetobacter radioresistens strain XH1688]
ATGAAAAAAGTTTTCAAAGGCAGCGCACTTCGTGCCTTGGGGTTTAAAAAGCAGTTTATTGCTCTCGCAATCTGTTCAAG
TTTGGGAATAATCATGCCTGGCATGGCTGAAGCAGCCAGCCGTAATATAAATCCGCCCTCTTTAAAAGCCAGTGCTCCTA
ATGTTTATGTGGTCAAAAAAGGGGATACTTTATGGGATATCGCCGGAAAATTCTTGAGTAAGCCGTGGCGCTGGCCAGAA
ATCTGGGCCAGCAACAAACATGTCAAGAATCCACACTGGATTTATCCGGGCGACCGTTTATTGCTGTGTACTCTAGACGG
ACGACCGCTGATCGGTAAAGATGAAGGTGACGGCTGTGAAGGTATTATTCGCCGTTATGGTGGCCAGACCAGTATGCAGC
CACAAGTTCGTGTTGAATCCCTAAATAATGCTATTCCAGTTATTCCGCTTGAACATATTCGGGTCTGGCTGGAACGCACC
CTGATAATGTCACCAGATTCAGTGGTCAATACCCCCTATATTTTAGGCACGGCTGATAACCGGGTATTGGCTGCTGCCGG
CCAAACCGTTTACGCACGCGGTAATGGCCTGCAAGTTGGTCAGCGTTATGCAGTTTATCGTGAGGGTGAGCCTTACATAT
TCACCGATGCTAATGGCAAGTCATATAATGCCGGTGTAGAGCTGCTTCAGGTGGCTTCCGGCGTAGCTGTGCAGAATGAA
CAGGATATTACTACGCTAGAATTAACGCAAAGTTATAATGGGGAAGTCCGTCGCGGGGATCGGGTCATGCCAGAATATGA
TCCTATGTTACCTACCCTGTTCTATCCAACAATTGACCATCAGGTGACTGAAGGCGGTCAGGTGATTCGGGTGATGGGAT
CAATCGGTACGGCAGCCAGACACAGTGTGGTAACTGTTAACCGGGGCAATATTCATGGTGTTCAGTCCGGTCAGGTATTC
AGTGTCTATCAGCAGGGTGAAGTTGTACGTGATCCGAAAACTCGCGAACAAATCAAACTGCCAAGTCAAAAAGTTGGTAA
TATTATGATTTTCCGTACTTTTGACCAGTTGAGCTATGCTTATGTACTGGACAGCGCTCTACCTATCAAAGTAGGTTCCG
TCATCCAGGCGCCGCCAATGGCAGAGTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(56-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

70.526

99.476

0.702

Multiple sequence alignment