Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABLB98_RS01555 Genome accession   NZ_CP157435
Coordinates   324669..325898 (-) Length   409 a.a.
NCBI ID   WP_348883276.1    Uniprot ID   -
Organism   Acinetobacter sp. XH1639     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 319669..330898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB98_RS01530 (ABLB98_01530) - 321002..321328 (+) 327 WP_004659291.1 pyrimidine/purine nucleoside phosphorylase -
  ABLB98_RS01535 (ABLB98_01535) rlmB 321511..322260 (+) 750 WP_348883277.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABLB98_RS01540 (ABLB98_01540) - 322291..323202 (+) 912 WP_249570191.1 DMT family transporter -
  ABLB98_RS01545 (ABLB98_01545) coaE 323199..323804 (-) 606 WP_087543054.1 dephospho-CoA kinase -
  ABLB98_RS01550 (ABLB98_01550) pilD 323806..324666 (-) 861 WP_283772246.1 A24 family peptidase Machinery gene
  ABLB98_RS01555 (ABLB98_01555) pilC 324669..325898 (-) 1230 WP_348883276.1 type II secretion system F family protein Machinery gene
  ABLB98_RS01560 (ABLB98_01560) pilB 325923..327638 (-) 1716 WP_348883274.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABLB98_RS01565 (ABLB98_01565) tpiA 327982..328773 (+) 792 WP_348883273.1 triose-phosphate isomerase -
  ABLB98_RS01570 (ABLB98_01570) secG 328786..329115 (+) 330 WP_005162938.1 preprotein translocase subunit SecG -
  ABLB98_RS01590 (ABLB98_01590) rimP 329738..330262 (+) 525 WP_348883272.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45156.68 Da        Isoelectric Point: 9.9160

>NTDB_id=1006833 ABLB98_RS01555 WP_348883276.1 324669..325898(-) (pilC) [Acinetobacter sp. XH1639]
MVAKKAQMMPTFTYEGVDRKGAKIKGELPARNMALAKVTLRKQGVTIKTIREKRKNILEGLMKKKIKTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPISVLIVAVIVTIILMVKVVPVFQDLFNSFGADLPAFTQLVVNMSKWMQEYWFILILAIGAIIT
AFLEAKKRSKKFRDILDKIALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATHFENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVVS

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1006833 ABLB98_RS01555 WP_348883276.1 324669..325898(-) (pilC) [Acinetobacter sp. XH1639]
ATGGTAGCGAAAAAAGCGCAAATGATGCCTACTTTTACTTATGAAGGGGTAGATCGAAAAGGCGCCAAAATTAAAGGGGA
ATTACCAGCACGCAATATGGCTTTAGCAAAGGTCACATTACGCAAACAAGGCGTCACAATTAAAACCATTCGAGAAAAAC
GCAAAAACATTCTCGAAGGTTTAATGAAGAAAAAAATAAAGACCCTCGATATTACGATCTTTACTCGTCAATTAGCAACC
ATGATGAAAGCCGGCGTTCCGCTTGTGCAAGGATTCGAAATCGTTGCAGAAGGTTTAGAAAATCCCTCTATGCGAGAGGT
GGTACTCGGCATTAAAGGAGAGGTTGAGGGCGGTAATACTTTTGCTGGTGCTTTACGTAAGTATCCACAATACTTTGATA
ATCTATTTTGCTCCCTTGTTGAATCTGGCGAACAATCTGGTGCACTTGAAACGATGCTCGATCGCGTCGCAATTTATAAA
GAAAAAAGTGAATTACTGAAACAAAAAATTAAAAAGGCCATGAAATATCCTATTAGTGTATTAATAGTTGCAGTGATTGT
TACAATTATTTTAATGGTCAAGGTTGTCCCTGTATTCCAGGATCTTTTTAACTCATTTGGTGCCGATCTGCCTGCATTCA
CGCAACTAGTCGTTAATATGTCAAAATGGATGCAAGAGTATTGGTTCATTCTTATTCTTGCAATTGGGGCAATTATTACA
GCTTTTCTTGAAGCAAAAAAGCGCAGCAAAAAATTCCGCGATATTTTAGATAAAATAGCACTAAAAGCTCCTATTTTTGG
TGATCTTGTTTATAAAGCAATTATTGCGCGTTACAGCCGCACGCTTGCAACTACTTTTGCAGCAGGTGTACCACTGATTG
ATGCTCTTGAATCTACAGCAGGTGCAACAAATAATGTGATTTACGAAGAAGCTGTCATGAAAATTCGTGAAGATGTGGCG
ACAGGTCAACAACTACAATTTGCAATGCGTGTTTCCAATCGCTTTCCCTCTATGGCAATTCAAATGGTTGCGATCGGTGA
AGAATCTGGTGCACTAGATAGTATGTTAGACAAAGTGGCAACACACTTTGAAAATGAAGTCGACAATGCTGTTGATGGTC
TTACTTCTATGATGGAACCATTAATTATGGCAATTTTAGGCGTACTTGTTGGTGGTCTAGTTATTGCCATGTATCTCCCT
ATCTTCCAAATGGGTTCGGTCGTTAGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

91.667

99.756

0.914
  pilC Acinetobacter baylyi ADP1

84.804

99.756

0.846
  pilC Pseudomonas stutzeri DSM 10701

60.688

99.511

0.604
  pilC Legionella pneumophila strain ERS1305867

53.333

99.022

0.528
  pilG Neisseria meningitidis 44/76-A

47

97.8

0.46
  pilG Neisseria gonorrhoeae MS11

47

97.8

0.46
  pilC Vibrio cholerae strain A1552

42.26

99.511

0.421
  pilC Vibrio campbellii strain DS40M4

40.199

98.533

0.396

Multiple sequence alignment