Detailed information NTG1006832

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABLB98_RS01550
• Genome accession: NZ_CP157435
• Coordinates: 323806..324666 (-)
• Length: 286 a.a.
• NCBI ID: WP_283772246.1
• Uniprot ID: -
• Organism: Acinetobacter sp. XH1639
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 318806..329666

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABLB98_RS01525 (ABLB98_01525)	recN	319001..320659 (-)	1659	WP_087547947.1	DNA repair protein RecN	-
ABLB98_RS01530 (ABLB98_01530)	-	321002..321328 (+)	327	WP_004659291.1	pyrimidine/purine nucleoside phosphorylase	-
ABLB98_RS01535 (ABLB98_01535)	rlmB	321511..322260 (+)	750	WP_348883277.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ABLB98_RS01540 (ABLB98_01540)	-	322291..323202 (+)	912	WP_249570191.1	DMT family transporter	-
ABLB98_RS01545 (ABLB98_01545)	coaE	323199..323804 (-)	606	WP_087543054.1	dephospho-CoA kinase	-
ABLB98_RS01550 (ABLB98_01550)	pilD	323806..324666 (-)	861	WP_283772246.1	A24 family peptidase	Machinery gene
ABLB98_RS01555 (ABLB98_01555)	pilC	324669..325898 (-)	1230	WP_348883276.1	type II secretion system F family protein	Machinery gene
ABLB98_RS01560 (ABLB98_01560)	pilB	325923..327638 (-)	1716	WP_348883274.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABLB98_RS01565 (ABLB98_01565)	tpiA	327982..328773 (+)	792	WP_348883273.1	triose-phosphate isomerase	-
ABLB98_RS01570 (ABLB98_01570)	secG	328786..329115 (+)	330	WP_005162938.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31938.40 Da
• Isoelectric Point: 7.5056

>NTDB_id=1006832 ABLB98_RS01550 WP_283772246.1 323806..324666(-) (pilD) [Acinetobacter sp. XH1639]
MQDIISYFINEPTALYIAIGLFSLCIGSFLNVVIYRTPKMMEQEWHHECQILLHPEQPIIDETKLTLSTPPSTCPKCKSA
IRWYQNIPVMSWLMLRGKCGACQNPISIRYPLIELLTMICSLIVVAIFGATVQMLFGLILTWVLITLTFIDFDTQLLPDR
FTLPLAALGLGINSFTVYTSAGSAIWGYLIGFLCLWIVYYIFKLVTGKEGMGYGDFKLLAALGAWMGPMMLPLIVLLSSV
VGAIIGIILIKMRGENQPFAFGPYIAIAGWIAFLWGNQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=1006832 ABLB98_RS01550 WP_283772246.1 323806..324666(-) (pilD) [Acinetobacter sp. XH1639]
ATGCAAGATATTATTAGTTATTTTATAAATGAGCCAACTGCATTATATATTGCTATTGGCCTTTTCAGCCTATGTATAGG
TAGTTTTTTAAATGTCGTCATCTATAGAACACCAAAGATGATGGAACAAGAATGGCATCATGAATGCCAAATATTATTAC
ACCCAGAACAACCTATAATAGACGAAACAAAATTAACCTTAAGCACCCCACCATCTACATGTCCAAAATGTAAATCTGCT
ATTCGCTGGTATCAAAATATTCCTGTAATGAGTTGGTTAATGCTTCGTGGCAAATGTGGTGCTTGCCAAAATCCAATTAG
TATTCGCTATCCACTTATTGAACTCTTAACAATGATTTGCTCATTAATAGTAGTTGCTATATTTGGCGCGACCGTACAAA
TGTTATTTGGTTTAATACTCACTTGGGTCTTAATCACATTAACGTTTATTGATTTCGACACACAGCTATTACCCGATCGC
TTTACCTTGCCACTTGCCGCACTAGGCCTAGGAATCAATAGTTTCACTGTTTATACTTCTGCAGGCTCAGCGATTTGGGG
CTATTTGATTGGCTTTCTATGTTTGTGGATTGTTTACTATATCTTTAAACTCGTCACAGGCAAGGAAGGCATGGGCTATG
GTGATTTCAAGCTCTTAGCCGCACTCGGGGCTTGGATGGGGCCAATGATGCTACCTCTAATTGTGCTACTCTCTTCAGTT
GTTGGTGCAATTATTGGTATTATTTTGATAAAAATGCGTGGTGAAAACCAACCATTTGCATTTGGTCCTTATATTGCAAT
TGCTGGTTGGATTGCATTTTTATGGGGAAATCAAATTATGAAAATATATCTAGGTGGATAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	81.469	100	0.815
pilD	Acinetobacter nosocomialis M2	81.469	100	0.815
pilD	Vibrio cholerae strain A1552	55.224	93.706	0.517
pilD	Vibrio campbellii strain DS40M4	52.809	93.357	0.493
pilD	Neisseria gonorrhoeae MS11	46.886	95.455	0.448