Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   GPW48_RS07995 Genome accession   NZ_LR738720
Coordinates   1569513..1570178 (-) Length   221 a.a.
NCBI ID   WP_074389964.1    Uniprot ID   -
Organism   Streptococcus suis isolate GD-0001     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1564513..1575178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW48_RS07990 hpf 1568894..1569436 (-) 543 WP_004194117.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  GPW48_RS07995 comFC/cflB 1569513..1570178 (-) 666 WP_074389964.1 ComF family protein Machinery gene
  GPW48_RS08000 comFA/cflA 1570171..1571463 (-) 1293 WP_074389963.1 DEAD/DEAH box helicase Machinery gene
  GPW48_RS08005 - 1571520..1572152 (+) 633 WP_171840851.1 YigZ family protein -
  GPW48_RS08010 cysK 1572242..1573168 (+) 927 WP_074389961.1 cysteine synthase A -
  GPW48_RS08015 - 1573194..1573565 (-) 372 WP_024394815.1 S1 RNA-binding domain-containing protein -
  GPW48_RS08020 - 1573567..1574967 (-) 1401 WP_074389960.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25762.62 Da        Isoelectric Point: 8.4541

>NTDB_id=1006792 GPW48_RS07995 WP_074389964.1 1569513..1570178(-) (comFC/cflB) [Streptococcus suis isolate GD-0001]
MSNCLLCGQAMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLSATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTVATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1006792 GPW48_RS07995 WP_074389964.1 1569513..1570178(-) (comFC/cflB) [Streptococcus suis isolate GD-0001]
ATGTCTAATTGTCTATTGTGCGGTCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGCATCTGTGAAGAATGTTTTTCAACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGAGTGCTACAAATATTCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGTAGCCACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae TIGR4

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae Rx1

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae D39

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae R6

48.624

98.643

0.48
  comFC/cflB Streptococcus mitis NCTC 12261

48.624

98.643

0.48

Multiple sequence alignment