Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABLC00_RS01820 Genome accession   NZ_CP157432
Coordinates   381523..382749 (-) Length   408 a.a.
NCBI ID   WP_033846386.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain XH1679     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 376523..387749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLC00_RS01790 (ABLC00_01790) - 376554..377864 (+) 1311 WP_033846384.1 tetratricopeptide repeat protein -
  ABLC00_RS01795 (ABLC00_01795) - 377941..378267 (+) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  ABLC00_RS01800 (ABLC00_01800) rlmB 378369..379118 (+) 750 WP_002156969.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABLC00_RS01805 (ABLC00_01805) - 379154..380068 (+) 915 WP_033846385.1 DMT family transporter -
  ABLC00_RS01810 (ABLC00_01810) coaE 380065..380661 (-) 597 WP_004883551.1 dephospho-CoA kinase -
  ABLC00_RS01815 (ABLC00_01815) pilD 380663..381523 (-) 861 WP_022575844.1 A24 family peptidase Machinery gene
  ABLC00_RS01820 (ABLC00_01820) pilC 381523..382749 (-) 1227 WP_033846386.1 type II secretion system F family protein Machinery gene
  ABLC00_RS01825 (ABLC00_01825) pilB 382777..384489 (-) 1713 WP_031952279.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABLC00_RS01830 (ABLC00_01830) tpiA 384780..385574 (+) 795 WP_004710827.1 triose-phosphate isomerase -
  ABLC00_RS01835 (ABLC00_01835) secG 385587..385916 (+) 330 WP_002156913.1 preprotein translocase subunit SecG -
  ABLC00_RS01855 (ABLC00_01855) rimP 386553..387077 (+) 525 WP_002157009.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45057.61 Da        Isoelectric Point: 9.8883

>NTDB_id=1006792 ABLC00_RS01820 WP_033846386.1 381523..382749(-) (pilC) [Acinetobacter nosocomialis strain XH1679]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRTIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKSEVEGGSTFALALKKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFSSFGAELPAFTQMVVNMSKWMQEYWFVMIIAIGVFIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRVTNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1006792 ABLC00_RS01820 WP_033846386.1 381523..382749(-) (pilC) [Acinetobacter nosocomialis strain XH1679]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAAGGAGA
ACTTCCGGCTAAAAATATGGCTTTAGCCAAAGTAACCTTACGCAAACAAGGGGTGACTGTTCGAACTATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTTAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACCCGACAACTGGCGACC
ATGATGAAAGCTGGTGTACCTCTAGTACAAGGCTTTGAAATTGTAGCAGAAGGTTTAGAAAACCCTGCCATGCGAGAGGT
TGTCCTCGGTATTAAAAGTGAAGTTGAAGGTGGTAGTACCTTTGCCTTAGCTTTAAAAAAGTACCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAATCTGGTGAACAGTCAGGTGCACTCGAAACGATGTTGGACCGCGTTGCAATTTATAAA
GAAAAAAGTGAGTTGCTCAAACAAAAAATCAAGAAAGCAATGAAATACCCTGCAACAGTTATTGTGGTAGCCATTGTGGT
GACTATTATTTTGATGGTTAAAGTAGTTCCCGTTTTCCAAGATCTGTTTTCTTCTTTCGGCGCAGAATTACCAGCATTCA
CACAGATGGTCGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCGTTATGATTATTGCAATTGGTGTATTTATTGCT
GCGTTTTTAGAAGCAAAAAAACGTAGTAAAAAGTTTCGTGATGGCTTAGATAAACTAGCGCTTAAGTTACCTATTTTCGG
AGATCTGGTTTATAAAGCAATTATTGCCCGTTATAGCCGTACGCTTGCTACAACATTTGCAGCAGGTGTTCCGCTTATTG
ATGCACTAGAGTCAACTGCAGGCGCAACAAATAATGTCATTTATGAGCAAGCTGTGATGAAAATTCGTGAAGATGTGGCA
ACCGGTCAACAACTTCAATTTGCTATGCGAGTAACTAATCGTTTTCCATCTATGGCTATACAAATGGTTGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTACTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACTTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTACTCGTAGGCGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.059

100

0.971
  pilC Acinetobacter baylyi ADP1

85.294

100

0.853
  pilC Pseudomonas stutzeri DSM 10701

59.753

99.265

0.593
  pilC Legionella pneumophila strain ERS1305867

53.086

99.265

0.527
  pilG Neisseria meningitidis 44/76-A

47.368

97.794

0.463
  pilG Neisseria gonorrhoeae MS11

47.368

97.794

0.463
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

40.347

99.02

0.4
  pilC Thermus thermophilus HB27

36.658

98.284

0.36

Multiple sequence alignment