Detailed information NTG1006791

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABLC00_RS01815
• Genome accession: NZ_CP157432
• Coordinates: 380663..381523 (-)
• Length: 286 a.a.
• NCBI ID: WP_022575844.1
• Uniprot ID: A0A2T7FRH3
• Organism: Acinetobacter nosocomialis strain XH1679
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 375663..386523

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABLC00_RS01790 (ABLC00_01790)	-	376554..377864 (+)	1311	WP_033846384.1	tetratricopeptide repeat protein	-
ABLC00_RS01795 (ABLC00_01795)	-	377941..378267 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
ABLC00_RS01800 (ABLC00_01800)	rlmB	378369..379118 (+)	750	WP_002156969.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ABLC00_RS01805 (ABLC00_01805)	-	379154..380068 (+)	915	WP_033846385.1	DMT family transporter	-
ABLC00_RS01810 (ABLC00_01810)	coaE	380065..380661 (-)	597	WP_004883551.1	dephospho-CoA kinase	-
ABLC00_RS01815 (ABLC00_01815)	pilD	380663..381523 (-)	861	WP_022575844.1	A24 family peptidase	Machinery gene
ABLC00_RS01820 (ABLC00_01820)	pilC	381523..382749 (-)	1227	WP_033846386.1	type II secretion system F family protein	Machinery gene
ABLC00_RS01825 (ABLC00_01825)	pilB	382777..384489 (-)	1713	WP_031952279.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABLC00_RS01830 (ABLC00_01830)	tpiA	384780..385574 (+)	795	WP_004710827.1	triose-phosphate isomerase	-
ABLC00_RS01835 (ABLC00_01835)	secG	385587..385916 (+)	330	WP_002156913.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32107.52 Da
• Isoelectric Point: 7.1784

>NTDB_id=1006791 ABLC00_RS01815 WP_022575844.1 380663..381523(-) (pilD) [Acinetobacter nosocomialis strain XH1679]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACHQP
IRWYQNIPLISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=1006791 ABLC00_RS01815 WP_022575844.1 380663..381523(-) (pilD) [Acinetobacter nosocomialis strain XH1679]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTGAATGTAGTGATTTACCGCACACCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCCATTATCGATCATGAGAAGCTAACTTTAAGTAAGCCTGCTTCATCATGCCCTGCATGCCATCAACCG
ATCCGTTGGTATCAAAATATCCCACTCATAAGCTGGCTAGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG
CATTCGCTATCCAGCCATCGAACTACTTACCATGCTATGTTCATTGGTGGTGGTTATGGTGTTTGGTCCAACCATACAAA
TGCTTTTTGGACTGGTCCTCACATGGGTACTGATAGCACTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTTGGTTTAGGCATTAACACCTTTAATATCTACACCTCACCCAACTCGGCCATTTGGGG
TTACCTCATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTAATTACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCATTTGCATTTGGGCCATATATTGCCAT
TGCAGGTTGGGTTGCCTTTTTATGGGGTGATCAAATTATGAAAATTTATTTAGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

3D structure

• AlphaFold DB: A0A2T7FRH3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	100	100	1
pilD	Acinetobacter baumannii D1279779	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.03	94.755	0.493
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441