Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | ABKP85_RS02125 | Genome accession | NZ_CP157379 |
| Coordinates | 404621..405010 (+) | Length | 129 a.a. |
| NCBI ID | WP_011834458.1 | Uniprot ID | - |
| Organism | Lactococcus cremoris strain NZ3900 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 399621..410010
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABKP85_RS02100 (ABKP85_02095) | pepA | 400480..401547 (-) | 1068 | WP_011834455.1 | glutamyl aminopeptidase | - |
| ABKP85_RS02105 (ABKP85_02100) | - | 401650..401934 (+) | 285 | WP_011675459.1 | hypothetical protein | - |
| ABKP85_RS02110 (ABKP85_02105) | - | 401979..402296 (+) | 318 | WP_011675460.1 | thioredoxin family protein | - |
| ABKP85_RS02115 (ABKP85_02110) | ytpR | 402402..403028 (+) | 627 | WP_011834456.1 | YtpR family tRNA-binding protein | - |
| ABKP85_RS02120 (ABKP85_02115) | nox | 403190..404530 (+) | 1341 | WP_011834457.1 | H2O-forming NADH oxidase | - |
| ABKP85_RS02125 (ABKP85_02120) | ssbB | 404621..405010 (+) | 390 | WP_011834458.1 | single-stranded DNA-binding protein | Machinery gene |
| ABKP85_RS02130 (ABKP85_02125) | groES | 405129..405413 (+) | 285 | WP_011834459.1 | co-chaperone GroES | - |
| ABKP85_RS02135 (ABKP85_02130) | groL | 405500..407128 (+) | 1629 | WP_011834460.1 | chaperonin GroEL | - |
| ABKP85_RS02140 (ABKP85_02135) | - | 407178..407990 (-) | 813 | WP_011675466.1 | MBL fold metallo-hydrolase | - |
| ABKP85_RS02145 (ABKP85_02140) | - | 408181..409608 (-) | 1428 | WP_011834461.1 | cell wall metabolism sensor histidine kinase WalK | - |
Sequence
Protein
Download Length: 129 a.a. Molecular weight: 14697.79 Da Isoelectric Point: 8.3705
>NTDB_id=1006443 ABKP85_RS02125 WP_011834458.1 404621..405010(+) (ssbB) [Lactococcus cremoris strain NZ3900]
MNKTMLIGRLTNAPEISKTTNNKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISVEGEIRTRN
YTDKNEQKHYITEILGLSYDLLESRATLALRESAVKTEELLLEADELPF
MNKTMLIGRLTNAPEISKTTNNKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISVEGEIRTRN
YTDKNEQKHYITEILGLSYDLLESRATLALRESAVKTEELLLEADELPF
Nucleotide
Download Length: 390 bp
>NTDB_id=1006443 ABKP85_RS02125 WP_011834458.1 404621..405010(+) (ssbB) [Lactococcus cremoris strain NZ3900]
ATGAATAAAACCATGTTGATTGGTCGTTTAACAAACGCACCTGAAATTTCGAAAACAACGAACAATAAATCTTATGTCCG
TGTGACTCTGGCAGTCAATCGCCGCTTCAAAAATGAAAAAGGAGAGCGAGAAGCAGACTTTATCTCGATAATTATATGGG
GAAAATCAGCAGAAACATTGGTTTCCTATGCTAAAAAAGGAAGTCTTATTTCTGTAGAGGGAGAGATTAGAACTAGAAAT
TATACTGATAAAAATGAACAGAAACACTATATTACAGAAATCTTAGGTTTGAGCTATGATTTATTGGAAAGTCGTGCGAC
TCTTGCCTTGAGAGAAAGCGCTGTAAAGACTGAGGAACTCTTACTTGAAGCTGATGAGCTCCCTTTCTGA
ATGAATAAAACCATGTTGATTGGTCGTTTAACAAACGCACCTGAAATTTCGAAAACAACGAACAATAAATCTTATGTCCG
TGTGACTCTGGCAGTCAATCGCCGCTTCAAAAATGAAAAAGGAGAGCGAGAAGCAGACTTTATCTCGATAATTATATGGG
GAAAATCAGCAGAAACATTGGTTTCCTATGCTAAAAAAGGAAGTCTTATTTCTGTAGAGGGAGAGATTAGAACTAGAAAT
TATACTGATAAAAATGAACAGAAACACTATATTACAGAAATCTTAGGTTTGAGCTATGATTTATTGGAAAGTCGTGCGAC
TCTTGCCTTGAGAGAAAGCGCTGTAAAGACTGAGGAACTCTTACTTGAAGCTGATGAGCTCCCTTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
99.225 |
100 |
0.992 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
61.538 |
100 |
0.62 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
56.923 |
100 |
0.574 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus mitis SK321 |
56.154 |
100 |
0.566 |
| ssbA | Streptococcus mutans UA159 |
54.615 |
100 |
0.55 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
42.857 |
86.822 |
0.372 |