Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   QUD44_RS01455 Genome accession   NZ_AP027275
Coordinates   286519..286908 (+) Length   129 a.a.
NCBI ID   WP_096368717.1    Uniprot ID   -
Organism   Lactococcus formosensis strain MS200408A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 286519..293359 286519..286908 within 0


Gene organization within MGE regions


Location: 286519..293359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUD44_RS01455 (LFMS200408A_02820) ssbB 286519..286908 (+) 390 WP_096368717.1 single-stranded DNA-binding protein Machinery gene
  QUD44_RS01460 (LFMS200408A_02830) - 286966..287496 (+) 531 WP_096368716.1 ClbS/DfsB family four-helix bundle protein -
  QUD44_RS01465 (LFMS200408A_02840) groES 287612..287893 (+) 282 WP_096368715.1 co-chaperone GroES -
  QUD44_RS01470 (LFMS200408A_02850) groL 287922..289547 (+) 1626 WP_096368714.1 chaperonin GroEL -
  QUD44_RS01475 (LFMS200408A_02860) - 289598..290410 (-) 813 WP_017369447.1 MBL fold metallo-hydrolase -
  QUD44_RS01480 (LFMS200408A_02870) - 290407..291825 (-) 1419 WP_096368713.1 ATP-binding protein -
  QUD44_RS01485 (LFMS200408A_02880) yycF 291818..292519 (-) 702 WP_003133894.1 response regulator YycF -
  QUD44_RS01490 (LFMS200408A_02890) tmk 292730..293359 (+) 630 WP_096368712.1 dTMP kinase -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14833.08 Da        Isoelectric Point: 9.3695

>NTDB_id=100568 QUD44_RS01455 WP_096368717.1 286519..286908(+) (ssbB) [Lactococcus formosensis strain MS200408A]
MNKMLLVGRLVADPELNKTSSGKSLLRINLAVKRRYKNASGEKDTDFISLVFWEKLAEHCTSYAKKGALLAVEGEIRTRS
YVDKHEQKRYVTEILVKNFDLLESRATIAMRQDSIKNNDIDLKEDELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=100568 QUD44_RS01455 WP_096368717.1 286519..286908(+) (ssbB) [Lactococcus formosensis strain MS200408A]
ATGAATAAAATGTTACTTGTTGGTCGACTCGTTGCGGACCCAGAGCTCAATAAAACATCCAGTGGAAAAAGTCTCTTGAG
GATAAATCTTGCTGTCAAAAGACGTTATAAAAATGCTTCCGGGGAAAAAGATACAGACTTTATCTCTTTGGTCTTTTGGG
AGAAACTAGCGGAACACTGTACATCCTATGCTAAAAAAGGAGCCTTACTTGCCGTGGAAGGGGAGATACGTACCAGAAGT
TATGTAGATAAACATGAACAAAAACGTTATGTGACAGAGATACTGGTGAAAAATTTTGATCTTTTAGAGAGTCGTGCAAC
CATCGCCATGCGACAAGATTCTATAAAAAACAATGACATTGACTTAAAAGAGGACGAATTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

57.364

100

0.574
  ssbB Streptococcus sobrinus strain NIDR 6715-7

53.077

100

0.535
  ssbB/cilA Streptococcus pneumoniae TIGR4

50.769

100

0.512
  ssbB/cilA Streptococcus mitis NCTC 12261

50.769

100

0.512
  ssbA Streptococcus mutans UA159

50

100

0.504
  ssbB/cilA Streptococcus pneumoniae D39

50

100

0.504
  ssbB/cilA Streptococcus pneumoniae Rx1

50

100

0.504
  ssbB/cilA Streptococcus pneumoniae R6

50

100

0.504
  ssbB/cilA Streptococcus mitis SK321

50

100

0.504
  ssb Latilactobacillus sakei subsp. sakei 23K

45.536

86.822

0.395

Multiple sequence alignment