Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   ABKA22_RS02110 Genome accession   NZ_CP157287
Coordinates   410105..410494 (+) Length   129 a.a.
NCBI ID   WP_251906278.1    Uniprot ID   -
Organism   Lactococcus lactis strain BIM B-1834     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 410105..413473 410105..410494 within 0


Gene organization within MGE regions


Location: 410105..413473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKA22_RS02110 (ABKA22_02110) ssbB 410105..410494 (+) 390 WP_251906278.1 single-stranded DNA-binding protein Machinery gene
  ABKA22_RS02115 (ABKA22_02115) groES 410614..410898 (+) 285 WP_003131589.1 co-chaperone GroES -
  ABKA22_RS02120 (ABKA22_02120) groL 410987..412615 (+) 1629 WP_023188993.1 chaperonin GroEL -
  ABKA22_RS02125 (ABKA22_02125) - 412661..413473 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14617.61 Da        Isoelectric Point: 5.9544

>NTDB_id=1005425 ABKA22_RS02110 WP_251906278.1 410105..410494(+) (ssbB) [Lactococcus lactis strain BIM B-1834]
MNKTMLIGRLTSAPEISKTTNDKSYVRVTLAVNRRFKNEKGEGEADFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YTDKQNQKHYVTEILGLSYDLLESRATIDLRESAIKTEETLLDAEELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=1005425 ABKA22_RS02110 WP_251906278.1 410105..410494(+) (ssbB) [Lactococcus lactis strain BIM B-1834]
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGCCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTAGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAAGGAGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTAGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGATTTACGAGAAAGCGCTATAAAGACTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

89.147

100

0.891
  ssbB Streptococcus sobrinus strain NIDR 6715-7

59.231

100

0.597
  ssbB/cilA Streptococcus pneumoniae TIGR4

55.385

100

0.558
  ssbA Streptococcus mutans UA159

54.615

100

0.55
  ssbB/cilA Streptococcus pneumoniae Rx1

54.615

100

0.55
  ssbB/cilA Streptococcus pneumoniae D39

54.615

100

0.55
  ssbB/cilA Streptococcus pneumoniae R6

54.615

100

0.55
  ssbB/cilA Streptococcus mitis NCTC 12261

54.615

100

0.55
  ssbB/cilA Streptococcus mitis SK321

54.615

100

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

42.857

86.822

0.372

Multiple sequence alignment