Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ABFT51_RS11335 Genome accession   NZ_CP157265
Coordinates   2338191..2339459 (+) Length   422 a.a.
NCBI ID   WP_134902869.1    Uniprot ID   -
Organism   Paenibacillus peoriae strain MHJL1     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2333191..2344459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT51_RS11300 (ABFT51_11300) fabG 2333194..2333961 (+) 768 WP_348624982.1 3-oxoacyl-ACP reductase FabG -
  ABFT51_RS11305 (ABFT51_11305) - 2334062..2334316 (+) 255 WP_013309950.1 DUF3243 domain-containing protein -
  ABFT51_RS11310 (ABFT51_11310) - 2334544..2335317 (+) 774 WP_013370747.1 DUF3388 domain-containing protein -
  ABFT51_RS11315 (ABFT51_11315) - 2335348..2336412 (+) 1065 WP_348624983.1 RodZ family helix-turn-helix domain-containing protein -
  ABFT51_RS11320 (ABFT51_11320) - 2336497..2336661 (+) 165 WP_023988236.1 hypothetical protein -
  ABFT51_RS11325 (ABFT51_11325) - 2336806..2337297 (+) 492 WP_013309953.1 YajQ family cyclic di-GMP-binding protein -
  ABFT51_RS11330 (ABFT51_11330) pgsA 2337508..2338095 (+) 588 WP_013309954.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABFT51_RS11335 (ABFT51_11335) cinA 2338191..2339459 (+) 1269 WP_134902869.1 competence/damage-inducible protein A Machinery gene
  ABFT51_RS11340 (ABFT51_11340) recA 2339702..2340763 (+) 1062 WP_023988239.1 recombinase RecA Machinery gene
  ABFT51_RS11345 (ABFT51_11345) - 2340959..2341708 (+) 750 WP_348624984.1 RecX family transcriptional regulator -
  ABFT51_RS11350 (ABFT51_11350) rny 2342083..2343627 (+) 1545 WP_013309958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46433.44 Da        Isoelectric Point: 4.7819

>NTDB_id=1005319 ABFT51_RS11335 WP_134902869.1 2338191..2339459(+) (cinA) [Paenibacillus peoriae strain MHJL1]
MKAEIIAVGTELLLGQIVNTNAQYLSQELATIGIDVYFQTVVGDNIDRLQEAIRIAQKRADIILFSGGLGPTQDDLTKEA
IAAVLGRKLHIDRLAMDKLDQFFRNRGVEMTENNRRQALSIEGATPLENETGLAVGDAIAQDGKFYVVLPGPPKELKPMF
ANQAKPWLLQQALSGEEMPIYSKMLKFAGIGESALETHLLDLIQSQTDPTIAPYAKEGEVTIRISTKAASESEALIKLTA
TEVEIQQRLSEYMYASEDVALEKVIVDLMAKRELTVSAAESCTGGMLMEHITSIPGSAVMFQGGIVCYSNEMKMKLLNVP
YDYLEGDHAPGAVSKEVALVLAEQARMIMDSDFGLSVTGVAGPGYSERKPVGLVYIGIAERDKETEVHELRLSGNRETIR
LRSVKAILYRLWRRLVENEKLS

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=1005319 ABFT51_RS11335 WP_134902869.1 2338191..2339459(+) (cinA) [Paenibacillus peoriae strain MHJL1]
ATGAAAGCTGAAATAATTGCAGTAGGAACAGAGTTATTGCTCGGACAAATAGTGAATACAAATGCTCAATATTTGTCACA
AGAGCTGGCTACAATTGGAATCGATGTATATTTTCAGACTGTGGTTGGCGATAACATAGATCGGCTTCAGGAAGCGATAA
GAATTGCTCAGAAGCGTGCGGATATTATTTTGTTTTCCGGCGGTCTGGGGCCGACTCAGGATGATTTGACGAAAGAGGCG
ATAGCGGCTGTATTGGGGCGAAAATTGCACATAGATCGTCTTGCAATGGACAAGCTAGATCAATTTTTCCGTAACCGTGG
GGTAGAAATGACCGAGAATAACCGCCGTCAGGCGCTTTCTATTGAAGGTGCTACTCCGCTTGAAAATGAGACAGGGCTAG
CTGTGGGCGACGCGATTGCACAGGACGGTAAATTTTATGTAGTTTTGCCTGGACCGCCTAAGGAACTCAAACCTATGTTT
GCAAACCAGGCGAAACCTTGGTTGCTTCAGCAGGCATTGAGCGGTGAGGAAATGCCAATTTATTCGAAAATGCTAAAATT
TGCAGGGATCGGTGAGTCAGCTCTTGAAACCCATTTGTTAGATCTAATCCAATCCCAGACAGATCCCACGATTGCCCCTT
ATGCCAAGGAAGGGGAAGTCACGATCCGTATATCCACCAAGGCGGCCAGCGAAAGTGAAGCATTAATTAAGCTGACAGCT
ACGGAAGTAGAAATTCAGCAGCGTCTTTCGGAGTATATGTATGCAAGCGAGGATGTTGCGCTGGAGAAGGTTATCGTAGA
TCTAATGGCCAAACGCGAACTCACTGTGAGTGCGGCAGAAAGCTGTACAGGTGGAATGCTGATGGAACACATCACTTCTA
TACCTGGCAGTGCTGTTATGTTTCAAGGTGGCATCGTGTGCTATTCCAATGAAATGAAGATGAAATTACTCAACGTGCCT
TATGATTATTTGGAAGGGGATCATGCGCCGGGTGCAGTGAGTAAGGAAGTAGCTCTTGTGCTTGCGGAGCAGGCGAGAAT
GATCATGGACAGCGATTTTGGACTTTCAGTTACTGGTGTAGCTGGGCCTGGGTATTCCGAACGGAAGCCAGTCGGTCTGG
TGTATATTGGCATTGCTGAACGCGACAAGGAAACGGAAGTACATGAGCTGAGACTGAGTGGCAACCGCGAAACAATCCGA
CTGCGATCAGTCAAAGCAATCCTGTACAGATTGTGGCGCAGGCTGGTAGAGAACGAGAAACTCTCTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)

Competence-damaged protein (CinA)

(260-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50

97.156

0.486
  cinA Streptococcus pneumoniae TIGR4

49.756

97.156

0.483
  cinA Streptococcus mitis NCTC 12261

49.512

97.156

0.481
  cinA Streptococcus pneumoniae Rx1

49.512

97.156

0.481
  cinA Streptococcus pneumoniae R6

49.512

97.156

0.481
  cinA Streptococcus pneumoniae D39

49.268

97.156

0.479
  cinA Bacillus subtilis subsp. subtilis str. 168

48.762

95.735

0.467
  cinA Streptococcus mutans UA159

45.412

100

0.457
  cinA Streptococcus suis isolate S10

45.078

91.469

0.412

Multiple sequence alignment