Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Regulator
Locus tag   FGL04_RS08155 Genome accession   NZ_LR594035
Coordinates   1586356..1586616 (-) Length   86 a.a.
NCBI ID   WP_138068839.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC5385     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1581356..1591616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL04_RS11100 (NCTC5385_01771) - 1581399..1581557 (-) 159 WP_225247817.1 hypothetical protein -
  FGL04_RS08135 (NCTC5385_01772) - 1581545..1582852 (-) 1308 WP_225247818.1 sensor histidine kinase -
  FGL04_RS11105 (NCTC5385_01773) - 1582948..1583238 (-) 291 WP_225247819.1 hypothetical protein -
  FGL04_RS08140 (NCTC5385_01774) - 1584110..1584292 (-) 183 WP_138069170.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  FGL04_RS08145 (NCTC5385_01775) - 1584311..1584562 (-) 252 WP_138068837.1 Blp family class II bacteriocin -
  FGL04_RS08150 (NCTC5385_01776) comB 1585514..1586035 (-) 522 WP_138068838.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator
  FGL04_RS08155 (NCTC5385_01778) comB 1586356..1586616 (-) 261 WP_138068839.1 hypothetical protein Regulator
  FGL04_RS08160 (NCTC5385_01779) - 1586626..1587123 (-) 498 Protein_1605 ATP-binding cassette domain-containing protein -
  FGL04_RS08165 (NCTC5385_01781) - 1587207..1588312 (+) 1106 WP_138068165.1 IS3 family transposase -
  FGL04_RS08170 (NCTC5385_01782) - 1588354..1589721 (-) 1368 Protein_1607 peptide cleavage/export ABC transporter -
  FGL04_RS10795 (NCTC5385_01783) - 1589992..1590135 (+) 144 WP_171011257.1 hypothetical protein -
  FGL04_RS11375 comD/blpH 1590176..1590409 (-) 234 WP_138069171.1 GHKL domain-containing protein Regulator
  FGL04_RS08180 (NCTC5385_01784) comD/blpH 1590370..1590996 (-) 627 WP_138068841.1 hypothetical protein Regulator

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10168.03 Da        Isoelectric Point: 9.8257

>NTDB_id=1005065 FGL04_RS08155 WP_138068839.1 1586356..1586616(-) (comB) [Streptococcus pseudoporcinus strain NCTC5385]
MNEDLLESSEYYQKRYHNFSTLIIIPIFSLLIFLGFFFIFMKKEITIKSVGTIKPVKIIEKIQSTSDNLVIKNNLEENRS
VKKMTF

Nucleotide


Download         Length: 261 bp        

>NTDB_id=1005065 FGL04_RS08155 WP_138068839.1 1586356..1586616(-) (comB) [Streptococcus pseudoporcinus strain NCTC5385]
ATGAATGAAGACTTATTAGAAAGTTCCGAATATTATCAAAAAAGATATCATAATTTTTCGACATTGATTATTATACCTAT
TTTTTCACTATTAATCTTTTTAGGATTTTTCTTTATATTTATGAAAAAAGAAATCACTATCAAGTCTGTGGGAACTATTA
AGCCTGTAAAAATTATAGAAAAAATCCAATCAACAAGTGATAATCTCGTCATTAAAAATAATCTAGAAGAAAATAGGAGT
GTGAAAAAAATGACGTTCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Streptococcus mutans UA159

51.807

96.512

0.5
  comB Streptococcus gordonii str. Challis substr. CH1

50.602

96.512

0.488
  comB/nlmE Streptococcus mutans UA159

50.602

96.512

0.488
  comB Streptococcus pneumoniae D39

45.783

96.512

0.442
  comB Streptococcus pneumoniae R6

45.783

96.512

0.442
  comB Streptococcus mitis SK321

45.783

96.512

0.442
  comB Streptococcus mitis NCTC 12261

45.783

96.512

0.442
  comB Streptococcus pneumoniae TIGR4

45.783

96.512

0.442
  comB Streptococcus pneumoniae Rx1

45.783

96.512

0.442

Multiple sequence alignment