Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Regulator
Locus tag   FGL04_RS08150 Genome accession   NZ_LR594035
Coordinates   1585514..1586035 (-) Length   173 a.a.
NCBI ID   WP_138068838.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC5385     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1580514..1591035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL04_RS08130 (NCTC5385_01770) - 1580803..1581399 (-) 597 WP_225247816.1 helix-turn-helix domain-containing protein -
  FGL04_RS11100 (NCTC5385_01771) - 1581399..1581557 (-) 159 WP_225247817.1 hypothetical protein -
  FGL04_RS08135 (NCTC5385_01772) - 1581545..1582852 (-) 1308 WP_225247818.1 sensor histidine kinase -
  FGL04_RS11105 (NCTC5385_01773) - 1582948..1583238 (-) 291 WP_225247819.1 hypothetical protein -
  FGL04_RS08140 (NCTC5385_01774) - 1584110..1584292 (-) 183 WP_138069170.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  FGL04_RS08145 (NCTC5385_01775) - 1584311..1584562 (-) 252 WP_138068837.1 Blp family class II bacteriocin -
  FGL04_RS08150 (NCTC5385_01776) comB 1585514..1586035 (-) 522 WP_138068838.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator
  FGL04_RS08155 (NCTC5385_01778) comB 1586356..1586616 (-) 261 WP_138068839.1 hypothetical protein Regulator
  FGL04_RS08160 (NCTC5385_01779) - 1586626..1587123 (-) 498 Protein_1605 ATP-binding cassette domain-containing protein -
  FGL04_RS08165 (NCTC5385_01781) - 1587207..1588312 (+) 1106 WP_138068165.1 IS3 family transposase -
  FGL04_RS08170 (NCTC5385_01782) - 1588354..1589721 (-) 1368 Protein_1607 peptide cleavage/export ABC transporter -
  FGL04_RS10795 (NCTC5385_01783) - 1589992..1590135 (+) 144 WP_171011257.1 hypothetical protein -
  FGL04_RS11375 comD/blpH 1590176..1590409 (-) 234 WP_138069171.1 GHKL domain-containing protein Regulator
  FGL04_RS08180 (NCTC5385_01784) comD/blpH 1590370..1590996 (-) 627 WP_138068841.1 hypothetical protein Regulator

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19604.88 Da        Isoelectric Point: 9.7341

>NTDB_id=1005064 FGL04_RS08150 WP_138068838.1 1585514..1586035(-) (comB) [Streptococcus pseudoporcinus strain NCTC5385]
MISEIEQELFTVEQSQLKILGENTFQENLLKKNKIVAKSDGILHIEPNIVKSNIIPKGTPIVKILPEIGKVKKIKIKFYV
LSKDISNLEIGDDLKFYIHVSSNKKVELHSKITEIDSSATETKQGNLFKISSEYVINDSMAKNIRYGMSGNIVIITGKKT
YLDYYINKLITNT

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1005064 FGL04_RS08150 WP_138068838.1 1585514..1586035(-) (comB) [Streptococcus pseudoporcinus strain NCTC5385]
ATGATTTCAGAGATTGAACAAGAATTATTTACAGTAGAGCAAAGTCAATTAAAAATTTTAGGAGAAAATACCTTTCAAGA
AAACTTGTTAAAGAAAAATAAAATAGTTGCTAAATCAGATGGAATATTGCATATTGAACCTAATATTGTCAAGTCAAATA
TTATTCCTAAAGGAACACCTATTGTTAAAATATTACCAGAAATAGGAAAAGTAAAAAAAATAAAAATTAAATTTTATGTT
CTAAGTAAAGATATTAGTAACTTAGAAATTGGCGATGACTTAAAATTTTATATACATGTTTCGTCAAATAAGAAAGTTGA
GTTACACTCTAAAATTACAGAAATTGATTCTAGTGCAACAGAAACAAAGCAAGGAAATCTATTTAAGATATCTTCTGAGT
ATGTGATAAATGATAGCATGGCTAAAAATATAAGGTATGGGATGAGTGGGAATATAGTTATTATTACAGGGAAAAAAACT
TATTTGGATTATTATATAAATAAACTTATTACTAATACTTAG

Domains

Predicted by InterProScan.

HlyD family secretion protein ()

(35-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Streptococcus gordonii str. Challis substr. CH1

40.361

95.954

0.387

Multiple sequence alignment