Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AABA75_RS05740 Genome accession   NZ_AP027272
Coordinates   1294936..1296150 (-) Length   404 a.a.
NCBI ID   WP_338291597.1    Uniprot ID   A0AA48KR06
Organism   Planctobacterium marinum strain Dej080120_11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1289936..1301150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA75_RS05710 (MACH26_11270) - 1290617..1291006 (+) 390 WP_338291591.1 BlaI/MecI/CopY family transcriptional regulator -
  AABA75_RS05715 (MACH26_11280) - 1291008..1292339 (+) 1332 WP_338291592.1 M23/M56 family metallopeptidase -
  AABA75_RS05720 (MACH26_11290) yacG 1292344..1292559 (-) 216 WP_338291593.1 DNA gyrase inhibitor YacG -
  AABA75_RS05725 (MACH26_11300) zapD 1292591..1293343 (-) 753 WP_338291594.1 cell division protein ZapD -
  AABA75_RS05730 (MACH26_11310) coaE 1293399..1294007 (-) 609 WP_338291595.1 dephospho-CoA kinase -
  AABA75_RS05735 (MACH26_11320) pilD 1294004..1294894 (-) 891 WP_338291596.1 A24 family peptidase Machinery gene
  AABA75_RS05740 (MACH26_11330) pilC 1294936..1296150 (-) 1215 WP_338291597.1 type II secretion system F family protein Machinery gene
  AABA75_RS05745 (MACH26_11340) - 1296233..1296667 (-) 435 WP_338291598.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  AABA75_RS05750 (MACH26_11350) nadC 1296989..1297909 (-) 921 WP_338291599.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AABA75_RS05755 (MACH26_11360) - 1298028..1298504 (-) 477 WP_338294811.1 TIGR02281 family clan AA aspartic protease -
  AABA75_RS05760 (MACH26_11370) ampD 1298650..1299198 (+) 549 WP_338291600.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  AABA75_RS05765 (MACH26_11380) ampE 1299137..1300033 (+) 897 WP_338291601.1 beta-lactamase regulator AmpE -
  AABA75_RS05770 (MACH26_11390) pdhR 1300275..1301042 (+) 768 WP_338291602.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 44129.91 Da        Isoelectric Point: 9.0824

>NTDB_id=100503 AABA75_RS05740 WP_338291597.1 1294936..1296150(-) (pilC) [Planctobacterium marinum strain Dej080120_11]
MAVKEAEKPEFIWTGKNKKGQTVKGEFIADSMNDAKSILRRRGISVTKIKKAPKPLLGGAKIEALDICNVSRQIATMLSA
GVTLIQTLEMIGQGHDKAPMRKMLGQITHEVQSGQPLSNSLRKFPDYFDDLYCDLVKTGEQSGALENIYDRIATYKEKAE
ALKSKIKKAMFYPVAVVVVAFIVTTILLIFVVPQFEEIFAGFGAELPAFTQFVLNISNFVQNNGPFIAMGMVAFAFFFKR
AYKNSQKLRDTLDAKLLKVPVIGEILVKASIARFTRTLSTTFAAGVPLIEALESAAGAAGNAVYRDAIRYMKSEVAGGEQ
MNIAMRSTNVFPPMVVQMVAIGEESGSVDDMLGKIATIYEREVDDMVDGLTSLLEPIIMAVLGVVIGGLIVAMYLPIFQL
GMVV

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=100503 AABA75_RS05740 WP_338291597.1 1294936..1296150(-) (pilC) [Planctobacterium marinum strain Dej080120_11]
ATGGCAGTAAAAGAAGCAGAAAAACCCGAGTTTATCTGGACGGGAAAAAATAAAAAGGGCCAGACAGTTAAAGGCGAATT
TATCGCCGACTCCATGAACGATGCTAAGTCGATTCTGCGTCGTCGCGGCATATCTGTTACTAAAATAAAAAAAGCACCTA
AGCCCCTGCTAGGCGGCGCCAAGATAGAAGCGCTGGACATTTGCAACGTTTCGCGACAAATTGCCACTATGTTATCCGCA
GGGGTAACACTTATCCAAACCCTGGAAATGATCGGCCAAGGCCATGATAAAGCGCCCATGCGCAAGATGCTGGGACAAAT
CACCCACGAAGTGCAATCCGGCCAACCTTTGTCAAACTCACTGCGAAAATTTCCCGATTATTTTGATGATTTGTACTGCG
ACCTGGTGAAAACCGGTGAACAGTCGGGTGCCTTGGAAAATATCTACGACCGTATCGCCACCTACAAAGAAAAAGCGGAA
GCGCTGAAATCGAAAATAAAAAAGGCTATGTTCTACCCTGTGGCGGTCGTGGTGGTGGCTTTCATTGTTACCACCATTTT
ATTGATTTTTGTTGTACCTCAGTTTGAGGAAATCTTTGCTGGGTTTGGCGCGGAACTCCCGGCCTTCACCCAATTCGTAC
TCAATATTTCTAATTTTGTGCAAAACAACGGCCCGTTCATCGCGATGGGCATGGTGGCATTTGCGTTTTTCTTTAAACGC
GCTTATAAAAATTCACAAAAACTAAGAGATACTTTAGACGCTAAACTATTGAAAGTACCCGTTATCGGAGAAATTTTGGT
GAAAGCCTCCATCGCCCGTTTTACCCGAACCTTATCCACTACATTCGCTGCCGGCGTTCCACTTATTGAAGCATTAGAAT
CGGCGGCTGGCGCTGCGGGCAACGCGGTTTACCGCGACGCAATTCGTTACATGAAATCTGAAGTAGCCGGTGGTGAGCAA
ATGAATATTGCCATGCGCAGCACTAACGTTTTTCCGCCAATGGTAGTGCAGATGGTGGCCATAGGTGAGGAGTCAGGTTC
AGTTGATGATATGTTAGGTAAGATAGCGACTATCTATGAACGTGAAGTAGACGACATGGTAGACGGTCTCACATCTTTAT
TGGAGCCAATCATTATGGCCGTTTTAGGGGTGGTGATAGGCGGATTAATCGTTGCCATGTATTTGCCTATATTCCAACTG
GGCATGGTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-193)

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.049

100

0.562
  pilC Acinetobacter baumannii D1279779

51.961

100

0.525
  pilC Acinetobacter baylyi ADP1

49.755

100

0.502
  pilC Legionella pneumophila strain ERS1305867

51.005

98.515

0.502
  pilC Vibrio cholerae strain A1552

46.939

97.03

0.455
  pilG Neisseria meningitidis 44/76-A

43.812

100

0.438
  pilC Vibrio campbellii strain DS40M4

44.784

97.277

0.436
  pilG Neisseria gonorrhoeae MS11

43.564

100

0.436
  pilC Thermus thermophilus HB27

37.25

99.01

0.369

Multiple sequence alignment