Detailed information NTG0100502

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AABA75_RS05735
• Genome accession: NZ_AP027272
• Coordinates: 1294004..1294894 (-)
• Length: 296 a.a.
• NCBI ID: WP_338291596.1
• Uniprot ID: A0AA48KNJ9
• Organism: Planctobacterium marinum strain Dej080120_11
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1289004..1299894

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABA75_RS05710 (MACH26_11270)	-	1290617..1291006 (+)	390	WP_338291591.1	BlaI/MecI/CopY family transcriptional regulator	-
AABA75_RS05715 (MACH26_11280)	-	1291008..1292339 (+)	1332	WP_338291592.1	M23/M56 family metallopeptidase	-
AABA75_RS05720 (MACH26_11290)	yacG	1292344..1292559 (-)	216	WP_338291593.1	DNA gyrase inhibitor YacG	-
AABA75_RS05725 (MACH26_11300)	zapD	1292591..1293343 (-)	753	WP_338291594.1	cell division protein ZapD	-
AABA75_RS05730 (MACH26_11310)	coaE	1293399..1294007 (-)	609	WP_338291595.1	dephospho-CoA kinase	-
AABA75_RS05735 (MACH26_11320)	pilD	1294004..1294894 (-)	891	WP_338291596.1	A24 family peptidase	Machinery gene
AABA75_RS05740 (MACH26_11330)	pilC	1294936..1296150 (-)	1215	WP_338291597.1	type II secretion system F family protein	Machinery gene
AABA75_RS05745 (MACH26_11340)	-	1296233..1296667 (-)	435	WP_338291598.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
AABA75_RS05750 (MACH26_11350)	nadC	1296989..1297909 (-)	921	WP_338291599.1	carboxylating nicotinate-nucleotide diphosphorylase	-
AABA75_RS05755 (MACH26_11360)	-	1298028..1298504 (-)	477	WP_338294811.1	TIGR02281 family clan AA aspartic protease	-
AABA75_RS05760 (MACH26_11370)	ampD	1298650..1299198 (+)	549	WP_338291600.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-

Sequence

Protein

• Length: 296 a.a.
• Molecular weight: 32886.34 Da
• Isoelectric Point: 8.3118

>NTDB_id=100502 AABA75_RS05735 WP_338291596.1 1294004..1294894(-) (pilD) [Planctobacterium marinum strain Dej080120_11]
MEQLLLVFNTWPWVFYGFVLFIGLTVGSFLNVVIYRLPVMMEKEFKHACESHFDTQIVSNSPAPTQTDRFNLAIPASTCP
KCGHKIKAWENIPVLSWILLKAKCSQCKTKISARYPTIEALTGALSVAMAIYLGPTLALFMALIFLWSLIALTFIDLDTM
LLPDQITLPLMWLGLLLSLKGIFITPDQAILGAALGYLSLWSVYWVFKLVTGKEGMGYGDFKLLAALGAWTGYAYLPVII
ILSSFVGAIIGIAMMITKKTEKGQAIPFGPYLAIAGLITFFFGESIVNHYWQFILS

Nucleotide

• Length: 891 bp

>NTDB_id=100502 AABA75_RS05735 WP_338291596.1 1294004..1294894(-) (pilD) [Planctobacterium marinum strain Dej080120_11]
ATGGAGCAATTGTTACTGGTATTTAATACCTGGCCTTGGGTGTTTTACGGTTTCGTCTTGTTTATCGGTTTAACCGTTGG
CAGCTTTTTAAATGTCGTGATCTATCGTCTCCCGGTGATGATGGAGAAAGAATTCAAGCATGCCTGCGAAAGCCATTTTG
ACACCCAGATTGTGAGCAATTCCCCTGCGCCGACGCAAACCGATCGATTCAATCTGGCTATTCCAGCGTCCACTTGCCCT
AAGTGTGGCCACAAAATCAAAGCATGGGAAAACATTCCCGTCTTAAGCTGGATTTTACTCAAAGCTAAATGCAGCCAATG
TAAAACCAAGATTTCGGCTCGATATCCCACAATCGAAGCATTAACAGGGGCACTGAGTGTCGCTATGGCCATTTATCTCG
GCCCGACTTTGGCACTATTCATGGCATTGATTTTTTTGTGGAGCCTCATTGCTCTGACATTTATCGATCTGGACACCATG
CTACTACCGGACCAAATCACCCTGCCGCTGATGTGGTTAGGATTATTGTTAAGCCTGAAAGGTATATTCATTACCCCAGA
TCAAGCTATTTTAGGTGCTGCGCTGGGTTATCTGAGTCTCTGGAGCGTTTATTGGGTTTTTAAACTGGTAACGGGTAAAG
AAGGCATGGGTTATGGCGACTTTAAGCTACTGGCGGCATTAGGCGCCTGGACTGGTTACGCTTATCTTCCAGTGATCATC
ATACTGTCCTCCTTCGTGGGCGCTATTATCGGCATCGCCATGATGATCACTAAAAAGACTGAAAAAGGACAAGCAATCCC
TTTTGGTCCCTACCTTGCTATTGCCGGACTCATCACCTTCTTCTTTGGCGAAAGTATTGTTAACCACTACTGGCAGTTTA
TTCTCTCATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (143-252)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-131)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	52.069	97.973	0.51
pilD	Vibrio cholerae strain A1552	49.474	96.284	0.476
pilD	Acinetobacter baumannii D1279779	49.097	93.581	0.459
pilD	Acinetobacter nosocomialis M2	48.375	93.581	0.453
pilD	Neisseria gonorrhoeae MS11	48.679	89.527	0.436