Detailed information NTG1004584

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: AAG688_RS14810
• Genome accession: NZ_CP157201
• Coordinates: 3201771..3203045 (+)
• Length: 424 a.a.
• NCBI ID: WP_411832955.1
• Uniprot ID: -
• Organism: Pseudoxanthomonas mexicana strain SDU_PSEU2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3199799..3211487	3201771..3203045	within	0

Gene organization within MGE regions

Location: 3199799..3211487

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAG688_RS14810	pilC	3201771..3203045 (+)	1275	WP_411832955.1	type II secretion system F family protein	Machinery gene
AAG688_RS14815	pilD	3203052..3203918 (+)	867	WP_411832956.1	prepilin peptidase	Machinery gene
AAG688_RS14820	-	3203974..3204231 (+)	258	WP_411832957.1	type II toxin-antitoxin system Phd/YefM family antitoxin	-
AAG688_RS14825	-	3204219..3204539 (+)	321	WP_411832958.1	type II toxin-antitoxin system RelE/ParE family toxin	-
AAG688_RS14830	coaE	3204575..3205255 (+)	681	WP_411832959.1	dephospho-CoA kinase	-
AAG688_RS14835	-	3205471..3206442 (-)	972	WP_411832960.1	Nudix family hydrolase	-
AAG688_RS14840	secA	3207139..3209892 (-)	2754	WP_411832961.1	preprotein translocase subunit SecA	-
AAG688_RS14845	-	3210049..3211002 (-)	954	WP_411832962.1	peptidoglycan DD-metalloendopeptidase family protein	-
AAG688_RS14850	-	3211011..3211487 (+)	477	WP_411832963.1	DciA family protein	-

Sequence

Protein

• Length: 424 a.a.
• Molecular weight: 46282.93 Da
• Isoelectric Point: 10.1402

>NTDB_id=1004584 AAG688_RS14810 WP_411832955.1 3201771..3203045(+) (pilC) [Pseudoxanthomonas mexicana strain SDU_PSEU2]
MAVTRSAAKKATRTITPTARDTKLLVPFVWEGIDKRGIKMKGESEARNANLLRAELRRQGITPGTVKPKPKPLFGAAGKP
ISPKEIAFFSRQMATMMKSGVPMIAALEIIAGGQKNVRMKKLVDTIRNDIEGGSSLSEAISKHPVQFDELYRGLVVAGEG
AGVLETVLETIASYKENIEALKGKIRKALFYPTMTIAVAIIVSAVLLIFVVPQFEEVFKDFGADLPAFTQLIVAASRFMV
AYWWLLLAITIGAISAFIFFKKRSPEFQHFLDRMILKVPVIGQIMHNSAIARFSRTLAVTFKAGVPLVEALDTIAGATGN
TVYEKAVLRIRDDVAVGYPVNMAMKQTQLFPHMVVQMTAIGEEAGALDAMLFKVAEYYEQEVNNAVDALASLIEPMIMVV
IGVLVGGMVIGMYLPIFKLAMVVG

Nucleotide

• Length: 1275 bp

>NTDB_id=1004584 AAG688_RS14810 WP_411832955.1 3201771..3203045(+) (pilC) [Pseudoxanthomonas mexicana strain SDU_PSEU2]
ATGGCCGTCACCCGCAGCGCCGCCAAGAAAGCCACCCGGACCATCACGCCGACCGCGCGCGATACCAAGCTGCTCGTCCC
GTTCGTCTGGGAAGGCATCGACAAGCGTGGCATCAAGATGAAGGGCGAAAGCGAGGCCCGCAACGCCAACCTGCTGCGCG
CCGAGTTGCGCCGGCAGGGCATCACCCCGGGCACCGTCAAGCCCAAGCCCAAGCCGCTGTTCGGCGCCGCTGGCAAGCCC
ATCTCACCGAAGGAAATCGCCTTCTTCAGCCGCCAGATGGCGACGATGATGAAATCCGGTGTTCCGATGATCGCTGCACT
GGAGATCATTGCGGGCGGTCAGAAGAACGTCCGGATGAAGAAACTTGTGGACACGATCCGCAACGATATCGAAGGCGGCT
CATCACTGTCGGAAGCCATCAGCAAGCATCCGGTTCAGTTCGACGAGCTATACCGTGGCCTTGTAGTTGCAGGTGAAGGC
GCTGGCGTGCTGGAAACCGTGCTGGAGACCATCGCCAGCTATAAGGAAAACATCGAGGCCCTGAAGGGAAAGATACGCAA
GGCACTTTTCTATCCCACGATGACCATAGCCGTGGCGATCATTGTCAGCGCCGTGCTGTTGATCTTCGTGGTTCCGCAAT
TCGAAGAGGTCTTTAAGGATTTTGGGGCAGATCTGCCCGCCTTCACTCAACTCATCGTCGCAGCTTCCAGATTCATGGTT
GCTTACTGGTGGCTGCTGCTCGCGATAACAATAGGTGCCATTTCTGCTTTCATATTCTTCAAGAAACGCTCACCGGAATT
CCAGCATTTCCTTGACCGTATGATTCTCAAAGTGCCGGTGATCGGGCAGATCATGCACAACTCGGCCATCGCCCGTTTTT
CCCGTACTTTGGCAGTAACTTTCAAGGCGGGTGTGCCGCTGGTCGAAGCACTGGACACGATTGCTGGTGCCACCGGCAAC
ACGGTCTATGAAAAAGCGGTGCTGCGCATCCGTGATGATGTGGCTGTCGGTTATCCAGTCAACATGGCAATGAAGCAGAC
CCAGTTGTTTCCGCACATGGTCGTGCAGATGACCGCCATCGGCGAGGAAGCCGGTGCACTGGATGCGATGCTGTTCAAGG
TGGCCGAGTACTACGAGCAGGAGGTCAACAACGCGGTCGATGCGCTCGCAAGCCTGATCGAGCCGATGATCATGGTCGTC
ATCGGTGTGCTGGTCGGTGGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTGGCGATGGTGGTCGGGTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (293-415)

• Type II secretion system (T2SS), protein F (T2SSF) (89-212)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Legionella pneumophila strain ERS1305867	52.475	95.283	0.5
pilC	Pseudomonas stutzeri DSM 10701	52.778	93.396	0.493
pilC	Acinetobacter baylyi ADP1	50.739	95.755	0.486
pilC	Acinetobacter baumannii D1279779	48.889	95.519	0.467
pilG	Neisseria gonorrhoeae MS11	43.641	94.575	0.413
pilG	Neisseria meningitidis 44/76-A	43.392	94.575	0.41
pilC	Vibrio cholerae strain A1552	39.901	95.755	0.382
pilC	Vibrio campbellii strain DS40M4	38.313	97.877	0.375