Detailed information NTG1004585

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAG688_RS14815
• Genome accession: NZ_CP157201
• Coordinates: 3203052..3203918 (+)
• Length: 288 a.a.
• NCBI ID: WP_411832956.1
• Uniprot ID: -
• Organism: Pseudoxanthomonas mexicana strain SDU_PSEU2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3199799..3211487	3203052..3203918	within	0

Gene organization within MGE regions

Location: 3199799..3211487

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAG688_RS14810	pilC	3201771..3203045 (+)	1275	WP_411832955.1	type II secretion system F family protein	Machinery gene
AAG688_RS14815	pilD	3203052..3203918 (+)	867	WP_411832956.1	prepilin peptidase	Machinery gene
AAG688_RS14820	-	3203974..3204231 (+)	258	WP_411832957.1	type II toxin-antitoxin system Phd/YefM family antitoxin	-
AAG688_RS14825	-	3204219..3204539 (+)	321	WP_411832958.1	type II toxin-antitoxin system RelE/ParE family toxin	-
AAG688_RS14830	coaE	3204575..3205255 (+)	681	WP_411832959.1	dephospho-CoA kinase	-
AAG688_RS14835	-	3205471..3206442 (-)	972	WP_411832960.1	Nudix family hydrolase	-
AAG688_RS14840	secA	3207139..3209892 (-)	2754	WP_411832961.1	preprotein translocase subunit SecA	-
AAG688_RS14845	-	3210049..3211002 (-)	954	WP_411832962.1	peptidoglycan DD-metalloendopeptidase family protein	-
AAG688_RS14850	-	3211011..3211487 (+)	477	WP_411832963.1	DciA family protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31824.70 Da
• Isoelectric Point: 8.6062

>NTDB_id=1004585 AAG688_RS14815 WP_411832956.1 3203052..3203918(+) (pilD) [Pseudoxanthomonas mexicana strain SDU_PSEU2]
MAFLDQNPGLGYPLVATLGLLVGSFLNVVILRLPRRLEWQWKRDAREILELPEIYEPPPPGIVVERSHCPHCKHQLSWFE
NIPLFSWLALRGRCRDCKAPISPQYPLVELLTALAALASVWHFGFGWQGFGAALLSCFLIALSGIDLRTRLLPDQLTLPL
LWLGLIASTDNLYMPVKPAVLGAIAGYLSLWSVWWLFKQITGKEGMGHGDFKLLAAIGAWVGLKGILPTILISSLVGAII
GSIWLAAKGRDRATPIPFGPYLAIAGWIVFFWGEQMVDAYLRYAGLGG

Nucleotide

• Length: 867 bp

>NTDB_id=1004585 AAG688_RS14815 WP_411832956.1 3203052..3203918(+) (pilD) [Pseudoxanthomonas mexicana strain SDU_PSEU2]
GTGGCATTCCTGGATCAGAACCCCGGCCTCGGCTACCCGCTCGTCGCCACCCTCGGCCTGCTGGTCGGCAGTTTCCTCAA
TGTGGTGATCCTGCGGCTACCGCGGCGGCTGGAGTGGCAGTGGAAGCGCGATGCGCGCGAGATCCTGGAGCTGCCCGAGA
TCTACGAGCCGCCGCCGCCGGGCATCGTGGTGGAGCGCTCGCACTGCCCGCACTGCAAGCACCAGTTGTCCTGGTTCGAG
AACATTCCGCTGTTCAGCTGGCTGGCGCTGCGCGGCAGGTGCCGCGATTGCAAGGCGCCCATCTCGCCGCAGTACCCGCT
GGTGGAACTGCTGACCGCACTGGCGGCGCTGGCCTCGGTCTGGCACTTCGGCTTCGGTTGGCAGGGCTTCGGCGCGGCGC
TGCTGAGCTGCTTCCTGATTGCGCTGTCGGGCATCGACCTGCGCACGCGGCTGCTGCCAGACCAGTTGACCCTGCCGCTG
CTGTGGCTGGGCCTGATCGCCAGTACCGACAACCTCTACATGCCGGTCAAGCCGGCCGTGCTGGGCGCCATTGCCGGCTA
CCTGTCGCTGTGGTCGGTGTGGTGGCTGTTCAAGCAGATCACCGGCAAGGAAGGCATGGGCCACGGCGACTTCAAGCTGC
TGGCGGCCATCGGCGCCTGGGTCGGGCTGAAGGGCATCCTGCCGACCATCCTGATTTCCTCGTTGGTCGGGGCGATCATC
GGCTCCATCTGGCTGGCGGCCAAGGGCCGCGACCGGGCCACGCCCATCCCGTTCGGCCCCTACCTGGCCATCGCCGGCTG
GATCGTGTTCTTCTGGGGTGAGCAGATGGTCGATGCCTACCTGCGCTATGCGGGGTTGGGCGGGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-123)

• Type IV leader peptidase family (Peptidase_A24) (134-241)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.899	95.833	0.507
pilD	Acinetobacter nosocomialis M2	47.917	100	0.479
pilD	Acinetobacter baumannii D1279779	47.569	100	0.476
pilD	Vibrio campbellii strain DS40M4	47.018	98.958	0.465
pilD	Neisseria gonorrhoeae MS11	47.104	89.931	0.424