Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   FGK83_RS05915 Genome accession   NZ_LR590465
Coordinates   1203063..1204439 (+) Length   458 a.a.
NCBI ID   WP_038441308.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC8468     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1198063..1209439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK83_RS05890 (NCTC8468_01181) - 1198812..1199252 (+) 441 WP_005653243.1 DoxX family protein -
  FGK83_RS05895 (NCTC8468_01182) - 1199291..1199578 (+) 288 WP_005671572.1 hypothetical protein -
  FGK83_RS05900 (NCTC8468_01183) - 1199639..1200562 (+) 924 WP_005623843.1 DUF692 domain-containing protein -
  FGK83_RS05905 (NCTC8468_01184) - 1200552..1201268 (+) 717 WP_005660567.1 DNA-binding domain-containing protein -
  FGK83_RS05910 (NCTC8468_01185) - 1201590..1202636 (+) 1047 WP_138171903.1 CYTH domain-containing protein -
  FGK83_RS05915 (NCTC8468_01186) radA/sms 1203063..1204439 (+) 1377 WP_038441308.1 DNA repair protein RadA Machinery gene
  FGK83_RS05920 (NCTC8468_01187) lrp 1204518..1204997 (+) 480 WP_005653255.1 leucine-responsive transcriptional regulator Lrp -
  FGK83_RS05925 (NCTC8468_01188) - 1204999..1207758 (+) 2760 WP_138171904.1 DNA translocase FtsK -
  FGK83_RS05930 (NCTC8468_01189) lolA 1207776..1208393 (+) 618 WP_050847573.1 outer membrane lipoprotein chaperone LolA -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49430.98 Da        Isoelectric Point: 8.1109

>NTDB_id=1004585 FGK83_RS05915 WP_038441308.1 1203063..1204439(+) (radA/sms) [Haemophilus influenzae strain NCTC8468]
MAKAPKTAYVCNDCGAEFSRWQGQCSACKAWNTITEVRLISTAKSKNDRFSGYAGETQAKIQTLSEISLQETPRFSSGFN
ELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMCGLAKNMTALYVTGEESLQQVAMRASRLGLSNDQLKMLSETSVEQI
CNLADQLKPQIIVVDSIQVMHLADIQSSPGSVAQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDCSLL
LEGEADSRYRTLRSHKNRFGAVNELGVFGMTEQGLREVKNPSAIFLSRGDEITSGSSVMVLWEGTRPLLVEIQALVDHSM
LANPRRVAVGLEQNRLSLLLAVLHRHGGLQMADQDVFVNVVGGVKVSETSADLALLLALISSFRNRPLPQDLVIFGEVGL
AGEIRPVPSGQERISEAAKHGFKRAIVPFGNKPKSAVENMQVFTVKKLTDALAVLDNL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1004585 FGK83_RS05915 WP_038441308.1 1203063..1204439(+) (radA/sms) [Haemophilus influenzae strain NCTC8468]
ATGGCTAAAGCCCCGAAAACAGCTTATGTATGTAACGATTGTGGTGCAGAGTTTTCTCGTTGGCAAGGGCAATGTTCGGC
TTGTAAAGCGTGGAATACCATTACGGAAGTGCGGTTAATTTCCACGGCAAAATCAAAAAATGATCGTTTTAGTGGCTATG
CGGGGGAAACTCAGGCAAAAATTCAAACCCTTTCTGAAATTAGTTTGCAAGAAACACCACGTTTTTCCAGTGGCTTTAAT
GAATTAGATCGGGTATTGGGCGGTGGGATCGTACCGGGCAGTGCGATTTTAATTGGTGGGCATCCTGGTGCAGGGAAAAG
TACATTGTTATTACAGGTCATGTGTGGTTTAGCGAAAAATATGACCGCACTTTATGTGACGGGAGAGGAATCGTTACAAC
AGGTTGCGATGCGTGCAAGTCGATTGGGATTGTCAAACGATCAATTAAAAATGTTGTCAGAAACCTCTGTGGAACAGATT
TGTAATTTGGCTGATCAGTTAAAACCGCAAATTATCGTGGTGGATTCCATCCAAGTAATGCATTTGGCGGATATTCAATC
ATCGCCCGGAAGTGTGGCACAAGTGCGTGAATGTGCTTCTTTCCTTACTCGTTACGCGAAAACCCGCCAAGTTGCCATTA
TTATGGTGGGGCATGTAACGAAAGACGGAACCCTTGCAGGGCCGAAAGTGTTAGAGCATGCGATTGACTGTTCATTACTA
TTAGAAGGCGAAGCCGATTCTCGCTATCGTACTTTACGCAGTCATAAAAACCGTTTTGGTGCGGTGAATGAATTAGGTGT
ATTTGGTATGACTGAACAAGGTTTGCGAGAAGTGAAAAATCCATCGGCGATCTTTTTAAGTCGTGGGGATGAGATTACAT
CGGGCAGTTCCGTGATGGTGCTTTGGGAAGGCACCCGCCCTCTTTTAGTTGAAATTCAAGCTTTAGTAGATCATTCAATG
TTGGCGAATCCTCGCCGTGTTGCGGTGGGATTAGAGCAAAATCGTTTGTCGTTGTTATTGGCGGTTTTACATAGACACGG
AGGTTTGCAAATGGCGGATCAAGATGTCTTTGTAAATGTCGTTGGTGGTGTAAAAGTTAGTGAAACAAGTGCGGATTTAG
CCTTATTGCTTGCGTTAATTTCTAGTTTCCGTAATCGCCCTTTGCCGCAAGATTTAGTGATTTTTGGCGAAGTTGGATTA
GCGGGAGAAATTCGTCCTGTGCCAAGTGGACAGGAACGTATTAGCGAGGCTGCAAAACACGGTTTTAAACGTGCTATTGT
TCCTTTTGGTAATAAGCCGAAAAGTGCGGTCGAAAATATGCAGGTTTTTACTGTGAAAAAACTCACGGATGCGCTCGCTG
TGTTAGATAATTTATAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(346-431)

AAA domain (AAA_25)

(80-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.841

100

0.469
  radA Streptococcus mitis NCTC 12261

43.488

98.908

0.43
  radA Streptococcus mitis SK321

43.488

98.908

0.43
  radA Streptococcus pneumoniae Rx1

44.988

93.668

0.421
  radA Streptococcus pneumoniae D39

44.988

93.668

0.421
  radA Streptococcus pneumoniae R6

44.988

93.668

0.421
  radA Streptococcus pneumoniae TIGR4

44.988

93.668

0.421

Multiple sequence alignment