Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ABEF79_RS14165 Genome accession   NZ_CP156810
Coordinates   2850497..2852665 (-) Length   722 a.a.
NCBI ID   WP_347456724.1    Uniprot ID   -
Organism   Acinetobacter sp. ANC 7454     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2845497..2857665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF79_RS14150 (ABEF79_14150) - 2847951..2848802 (-) 852 WP_347454499.1 hypothetical protein -
  ABEF79_RS14155 (ABEF79_14155) aroB 2848816..2849895 (-) 1080 WP_347460790.1 3-dehydroquinate synthase -
  ABEF79_RS14160 (ABEF79_14160) aroK 2849924..2850460 (-) 537 WP_347454501.1 shikimate kinase AroK -
  ABEF79_RS14165 (ABEF79_14165) pilQ 2850497..2852665 (-) 2169 WP_347456724.1 type IV pilus secretin PilQ family protein Machinery gene
  ABEF79_RS14170 (ABEF79_14170) pilP 2852682..2853209 (-) 528 WP_034585535.1 pilus assembly protein PilP Machinery gene
  ABEF79_RS14175 (ABEF79_14175) comO 2853209..2853931 (-) 723 WP_347454115.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABEF79_RS14180 (ABEF79_14180) pilN 2853925..2854569 (-) 645 WP_347453499.1 PilN domain-containing protein Machinery gene
  ABEF79_RS14185 (ABEF79_14185) pilM 2854569..2855627 (-) 1059 WP_347455476.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 722 a.a.        Molecular weight: 78898.31 Da        Isoelectric Point: 5.1809

>NTDB_id=1003016 ABEF79_RS14165 WP_347456724.1 2850497..2852665(-) (pilQ) [Acinetobacter sp. ANC 7454]
MNKSFKEFIFGDGNTMNHVFRQFSMGAVAIAVMQAASAQIAITNVVPMQVPGQGTEIRVMFNGLPPQPQAYQLESPSRLI
LDFEQAQQNLKQGNIPVATKEANSVDVSSDAQRARLTVNLADAGAFTTRVEGNTFILKINSNSPAAVVQPVVQQAAQGIT
NIGFQRGAKGEGQVVIDLASGNTPVDVQQQGTKIVVRALGSKIPAHLTRRLNVNDFATPVSTVDAVNQNGSGVITIQTSD
SYEYMAYQTDNKLTISLKRPEEKNPLRPKAAHHYTGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKEV
PWDQALDIVLKTKNLDKRRNGNVIWIAPVTELIKAEEEEAKALAQSVKLAPIQTEYIQLNYAKAADIEKLITQNKGASNS
GSSNSNNNSDDKESLLSSRGSISIDARTNTLIVNDTQPFIDKIRNMVDLLDVQVKQVMVEARIVRASTEFTKEIGVKWGV
LSQGITNNNHLLVGGSDTTLWNLREPERNDELGGYTYEIERPQNLNVDLGVTNAAGKIAFGLISLSDFMLDLELSALQAD
GYGEVISTPKVLTADKQKATVESGFEVPYQSSEGGGINAVAKTEFKDVVLKLDVTPSITPDGKVQMDLDISSDSIAGVTP
MGEYYLNKNKLNTNVLVENGETVVLGGIFEQETLNQQTKVPFLGDIPYLGRLFRKDAKSDNKRELLIFVTPRIVNDSVSR
NH

Nucleotide


Download         Length: 2169 bp        

>NTDB_id=1003016 ABEF79_RS14165 WP_347456724.1 2850497..2852665(-) (pilQ) [Acinetobacter sp. ANC 7454]
ATGAATAAAAGTTTTAAAGAATTTATTTTTGGGGATGGTAATACAATGAATCATGTGTTTCGTCAGTTTTCTATGGGGGC
AGTTGCGATTGCAGTGATGCAGGCAGCAAGTGCACAAATCGCAATCACTAATGTGGTGCCAATGCAGGTTCCTGGACAAG
GAACCGAAATTCGTGTGATGTTTAATGGTTTACCGCCACAGCCACAAGCTTATCAGCTGGAATCTCCATCACGTTTGATC
CTTGATTTTGAACAGGCACAGCAGAACCTGAAACAAGGTAATATTCCTGTTGCAACAAAAGAAGCAAATTCTGTTGATGT
GTCTTCAGATGCACAACGTGCACGTTTAACCGTGAATCTGGCTGACGCGGGTGCATTCACGACGCGTGTAGAAGGCAACA
CCTTTATTTTAAAGATCAATTCTAATAGCCCAGCGGCTGTTGTTCAGCCAGTAGTTCAACAGGCTGCTCAAGGAATTACC
AATATTGGTTTCCAGCGTGGCGCTAAAGGTGAAGGACAAGTCGTCATTGATCTGGCGAGTGGTAATACGCCAGTTGATGT
ACAGCAACAAGGTACTAAAATTGTGGTTCGTGCATTAGGTAGCAAGATCCCAGCACATTTAACCCGTCGCCTGAATGTGA
ATGATTTTGCCACACCGGTTTCTACTGTAGATGCAGTCAACCAAAATGGTTCAGGTGTGATTACCATTCAGACTTCAGAT
AGCTATGAATATATGGCGTATCAAACTGATAACAAGCTAACAATCAGTTTGAAACGTCCAGAAGAGAAAAATCCATTACG
TCCTAAAGCAGCACATCATTATACGGGCAAGAAAATTTCTCTAGATTTCCAAGATATTGAAGTTCGACGCGTATTGCAGT
TGTTAGCGGACTTTACTGATATCAATATGGTCGCTGCGGATAGTGTGCAAGGTAATATTACTTTACGTCTTAAGGAAGTA
CCTTGGGATCAAGCGCTGGATATCGTTTTAAAGACTAAAAATCTGGATAAACGCCGTAATGGGAATGTCATCTGGATCGC
ACCAGTTACTGAACTGATTAAAGCTGAAGAAGAAGAAGCCAAAGCATTAGCTCAAAGTGTGAAGTTGGCTCCGATTCAGA
CTGAATACATTCAATTGAATTATGCGAAAGCTGCTGATATAGAAAAACTGATCACCCAAAATAAAGGTGCTTCAAATAGT
GGTAGTTCAAATTCAAACAACAATAGTGATGACAAAGAAAGCTTGCTCAGTTCTCGTGGCTCTATTTCGATTGATGCACG
TACCAATACCTTGATTGTGAATGACACCCAGCCATTTATTGATAAAATCCGCAATATGGTGGATCTACTGGATGTTCAGG
TTAAACAGGTGATGGTAGAAGCACGTATTGTTCGAGCTTCAACTGAATTTACCAAAGAAATTGGTGTTAAATGGGGTGTT
TTATCTCAAGGGATCACCAATAATAATCATCTTCTTGTAGGTGGTAGTGATACAACTTTATGGAATTTACGTGAGCCTGA
GAGGAATGATGAGTTAGGTGGTTATACCTATGAAATTGAGCGACCACAAAACCTGAATGTTGATTTAGGTGTAACGAATG
CTGCCGGTAAAATTGCTTTTGGTTTAATTAGTCTCTCGGATTTTATGTTGGATCTTGAACTTTCTGCATTACAGGCCGAT
GGTTATGGAGAGGTAATTTCAACACCTAAAGTTTTGACCGCTGACAAGCAAAAAGCCACTGTAGAATCTGGTTTTGAAGT
GCCATATCAATCATCTGAAGGTGGTGGTATAAATGCTGTAGCTAAAACTGAATTCAAGGACGTGGTGCTTAAGCTGGATG
TGACACCAAGTATTACGCCGGACGGAAAAGTGCAAATGGATCTGGATATTTCGAGTGATAGTATTGCCGGGGTAACACCA
ATGGGTGAATACTACTTGAACAAGAACAAGTTAAATACTAATGTTCTAGTTGAAAATGGTGAAACCGTCGTGCTCGGTGG
TATTTTTGAACAGGAAACCCTGAATCAGCAAACGAAAGTGCCTTTCTTAGGAGATATTCCATATCTAGGCCGTTTATTCC
GTAAGGATGCAAAATCGGATAATAAACGTGAGCTCCTGATTTTTGTTACCCCTCGAATTGTTAATGACAGTGTTTCAAGA
AATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(556-714)

Bacterial type II/III secretion system short domain (Secretin_N)

(375-456)

AMIN domain (AMIN)

(54-135)

Secretin and TonB N terminus short domain (STN)

(306-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

73.786

99.861

0.737
  pilQ Acinetobacter baumannii strain A118

73.648

99.861

0.735
  comQ Acinetobacter baylyi ADP1

69.722

99.723

0.695
  pilQ Pseudomonas aeruginosa PAK

42.06

96.814

0.407
  pilQ Legionella pneumophila strain Lp02

37.986

96.26

0.366
  pilQ Legionella pneumophila strain ERS1305867

37.986

96.26

0.366

Multiple sequence alignment