Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   ABEF79_RS14175 Genome accession   NZ_CP156810
Coordinates   2853209..2853931 (-) Length   240 a.a.
NCBI ID   WP_347454115.1    Uniprot ID   -
Organism   Acinetobacter sp. ANC 7454     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2848209..2858931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF79_RS14155 (ABEF79_14155) aroB 2848816..2849895 (-) 1080 WP_347460790.1 3-dehydroquinate synthase -
  ABEF79_RS14160 (ABEF79_14160) aroK 2849924..2850460 (-) 537 WP_347454501.1 shikimate kinase AroK -
  ABEF79_RS14165 (ABEF79_14165) pilQ 2850497..2852665 (-) 2169 WP_347456724.1 type IV pilus secretin PilQ family protein Machinery gene
  ABEF79_RS14170 (ABEF79_14170) pilP 2852682..2853209 (-) 528 WP_034585535.1 pilus assembly protein PilP Machinery gene
  ABEF79_RS14175 (ABEF79_14175) comO 2853209..2853931 (-) 723 WP_347454115.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABEF79_RS14180 (ABEF79_14180) pilN 2853925..2854569 (-) 645 WP_347453499.1 PilN domain-containing protein Machinery gene
  ABEF79_RS14185 (ABEF79_14185) pilM 2854569..2855627 (-) 1059 WP_347455476.1 pilus assembly protein PilM Machinery gene
  ABEF79_RS14190 (ABEF79_14190) ponA 2855794..2858325 (+) 2532 WP_347460791.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27139.73 Da        Isoelectric Point: 4.6463

>NTDB_id=1003018 ABEF79_RS14175 WP_347454115.1 2853209..2853931(-) (comO) [Acinetobacter sp. ANC 7454]
MMSEQFEDLGQEPVVAPKNKMTVEKFFQQFNTLDPNNYGSWPIAVKITCWIFIVFVVMMLAYFGLIRGQIEAIAQANAQE
QNLLNEFRDKDSKLRNLQQYQQQLQEMEARFNQQLEQLPKETEIPGLVEDINLSGVNAGLKFKNIRLEPEVKQEFFIEQP
ISIEATGDYHSFGSFVSGIAGLSRIVTLHDFEITGTANKEKKTDIPVIDYVVKAKTYRYVGNANTNSTADNTAANGQGAQ

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1003018 ABEF79_RS14175 WP_347454115.1 2853209..2853931(-) (comO) [Acinetobacter sp. ANC 7454]
ATCATGAGCGAACAATTTGAAGATTTAGGTCAAGAGCCAGTTGTTGCACCGAAAAATAAAATGACGGTGGAGAAGTTTTT
CCAGCAGTTTAATACCCTGGATCCAAATAATTATGGTAGCTGGCCGATCGCAGTTAAAATTACCTGCTGGATTTTTATTG
TCTTTGTGGTAATGATGCTGGCTTATTTTGGTTTGATCCGCGGCCAAATCGAAGCCATTGCACAAGCGAATGCTCAGGAG
CAAAACTTGCTCAATGAGTTCCGTGATAAGGATTCCAAGCTGCGTAACTTGCAACAATATCAGCAACAATTGCAGGAAAT
GGAAGCACGTTTTAACCAGCAACTCGAGCAGTTGCCGAAAGAAACAGAAATTCCTGGATTGGTTGAAGATATTAACTTGA
GCGGTGTCAACGCCGGCCTGAAGTTCAAAAATATCCGTCTTGAACCTGAAGTGAAGCAGGAATTCTTTATTGAGCAACCG
ATCTCGATTGAAGCAACAGGTGATTATCATTCTTTTGGTTCATTTGTTAGTGGTATTGCAGGTCTGTCACGTATCGTGAC
ACTGCATGATTTTGAAATTACTGGTACGGCAAACAAAGAGAAGAAAACTGATATTCCAGTGATTGATTATGTGGTGAAAG
CAAAAACTTATCGCTATGTAGGAAACGCTAATACTAATAGTACAGCAGATAATACAGCTGCAAACGGTCAGGGGGCACAG
TAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

66.393

100

0.675
  pilO Acinetobacter baumannii D1279779

68.584

94.167

0.646

Multiple sequence alignment