Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ABEF79_RS14180 Genome accession   NZ_CP156810
Coordinates   2853925..2854569 (-) Length   214 a.a.
NCBI ID   WP_347453499.1    Uniprot ID   -
Organism   Acinetobacter sp. ANC 7454     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2848925..2859569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF79_RS14160 (ABEF79_14160) aroK 2849924..2850460 (-) 537 WP_347454501.1 shikimate kinase AroK -
  ABEF79_RS14165 (ABEF79_14165) pilQ 2850497..2852665 (-) 2169 WP_347456724.1 type IV pilus secretin PilQ family protein Machinery gene
  ABEF79_RS14170 (ABEF79_14170) pilP 2852682..2853209 (-) 528 WP_034585535.1 pilus assembly protein PilP Machinery gene
  ABEF79_RS14175 (ABEF79_14175) comO 2853209..2853931 (-) 723 WP_347454115.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABEF79_RS14180 (ABEF79_14180) pilN 2853925..2854569 (-) 645 WP_347453499.1 PilN domain-containing protein Machinery gene
  ABEF79_RS14185 (ABEF79_14185) pilM 2854569..2855627 (-) 1059 WP_347455476.1 pilus assembly protein PilM Machinery gene
  ABEF79_RS14190 (ABEF79_14190) ponA 2855794..2858325 (+) 2532 WP_347460791.1 penicillin-binding protein PBP1a -
  ABEF79_RS14195 (ABEF79_14195) - 2858388..2859191 (-) 804 WP_347453497.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23990.23 Da        Isoelectric Point: 4.7839

>NTDB_id=1003019 ABEF79_RS14180 WP_347453499.1 2853925..2854569(-) (pilN) [Acinetobacter sp. ANC 7454]
MAKINLLPWRDELRVKRNNEFIAYCVGALLLGVTAAGGGWFYYDQKLQDQEQANQLIISTNQNLDVQLKSLDGLQEQRDA
IVERMKLIQGLQTQRPIAVHLIDEIVRVTPSDMYVTKFVRTGDKFTIEGKAASPNTVAELLRNLEASPWYRNAFMNSFLA
AEEKKDKAPSSLIPRIEESYGTFTVTVDLDQIAQPVLSEQQPQAAETTTQGATS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1003019 ABEF79_RS14180 WP_347453499.1 2853925..2854569(-) (pilN) [Acinetobacter sp. ANC 7454]
ATGGCAAAAATTAACCTATTGCCTTGGCGTGATGAGCTAAGAGTCAAAAGAAATAATGAATTTATCGCATATTGCGTAGG
GGCTTTGTTGCTCGGTGTAACAGCAGCAGGGGGCGGCTGGTTCTATTACGATCAAAAATTACAGGATCAGGAACAGGCCA
ATCAACTTATCATTAGTACCAACCAGAATCTGGATGTGCAGCTGAAATCACTCGATGGTTTGCAAGAGCAGCGTGATGCG
ATTGTCGAGCGTATGAAACTGATTCAGGGCTTGCAAACCCAGCGTCCGATTGCGGTGCATCTGATTGATGAAATTGTGCG
GGTAACGCCAAGTGATATGTATGTCACCAAGTTTGTACGTACCGGGGATAAGTTCACGATTGAAGGCAAGGCTGCAAGTC
CAAATACCGTGGCAGAGTTGCTTCGTAATTTGGAAGCCTCTCCTTGGTATCGCAATGCATTTATGAATTCGTTCCTGGCA
GCGGAAGAGAAGAAGGACAAAGCACCAAGTTCTCTGATTCCGCGTATTGAAGAGTCTTATGGAACGTTCACAGTAACTGT
TGATCTTGACCAGATTGCTCAGCCTGTGCTTTCCGAGCAGCAACCACAGGCAGCTGAGACAACTACACAGGGGGCGACAT
CATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

75.648

90.187

0.682
  comN Acinetobacter baylyi ADP1

69.565

96.729

0.673

Multiple sequence alignment