Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ECRM13516_RS17185 Genome accession   NZ_CP006262
Coordinates   3363625..3364140 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli O145:H28 str. RM13516     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3358625..3369140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECRM13516_RS17165 (ECRM13516_3393) emrA 3358775..3359947 (+) 1173 WP_001400789.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  ECRM13516_RS17170 (ECRM13516_3394) emrB 3359964..3361502 (+) 1539 WP_025380562.1 multidrug efflux MFS transporter permease subunit EmrB -
  ECRM13516_RS17175 (ECRM13516_3395) - 3361760..3362467 (+) 708 WP_025380563.1 RNA ligase family protein -
  ECRM13516_RS17180 - 3362464..3363576 (+) 1113 Protein_3314 AAA family ATPase -
  ECRM13516_RS17185 (ECRM13516_3397) luxS 3363625..3364140 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  ECRM13516_RS17190 (ECRM13516_3398) gshA 3364290..3365846 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  ECRM13516_RS17195 (ECRM13516_3399) yqaA 3365919..3366347 (-) 429 WP_001287453.1 YqaA family protein -
  ECRM13516_RS17200 (ECRM13516_3400) yqaB 3366344..3366910 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  ECRM13516_RS17240 (ECRM13516_3407) csrA 3368507..3368692 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=100286 ECRM13516_RS17185 WP_001130211.1 3363625..3364140(-) (luxS) [Escherichia coli O145:H28 str. RM13516]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=100286 ECRM13516_RS17185 WP_001130211.1 3363625..3364140(-) (luxS) [Escherichia coli O145:H28 str. RM13516]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment