Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABEF83_RS13900 Genome accession   NZ_CP156768
Coordinates   2832374..2833606 (+) Length   410 a.a.
NCBI ID   WP_347454518.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7974     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2827374..2838606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF83_RS13855 (ABEF83_13855) rimP 2827741..2828265 (-) 525 WP_034587514.1 ribosome maturation factor RimP -
  ABEF83_RS13885 (ABEF83_13885) secG 2829216..2829545 (-) 330 WP_034587516.1 preprotein translocase subunit SecG -
  ABEF83_RS13890 (ABEF83_13890) tpiA 2829559..2830350 (-) 792 WP_347454516.1 triose-phosphate isomerase -
  ABEF83_RS13895 (ABEF83_13895) pilB 2830633..2832342 (+) 1710 WP_347454517.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABEF83_RS13900 (ABEF83_13900) pilC 2832374..2833606 (+) 1233 WP_347454518.1 type II secretion system F family protein Machinery gene
  ABEF83_RS13905 (ABEF83_13905) pilD 2833621..2834478 (+) 858 WP_034587523.1 A24 family peptidase Machinery gene
  ABEF83_RS13910 (ABEF83_13910) coaE 2834483..2835082 (+) 600 WP_034587525.1 dephospho-CoA kinase -
  ABEF83_RS13915 (ABEF83_13915) - 2835107..2836027 (-) 921 WP_034587527.1 DMT family transporter -
  ABEF83_RS13920 (ABEF83_13920) rlmB 2836061..2836810 (-) 750 WP_347454519.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABEF83_RS13925 (ABEF83_13925) - 2836963..2837286 (-) 324 WP_034587531.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45183.89 Da        Isoelectric Point: 9.9407

>NTDB_id=1002568 ABEF83_RS13900 WP_347454518.1 2832374..2833606(+) (pilC) [Acinetobacter thermotolerans strain ANC 7974]
MASVKKGQMMPTFLYEGVDRKGVKIKGEMPARNLALAKVTLRKQGISIKSIREKKKNILEGLMKKRVTTLDITIFTRQLA
TMMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQYFDKLFCSLVESGEQSGALETMLDRVALY
KEKSELLKQKIKKAMKYPISVIIVAIIVTIILMVKVVPVFEELFAGFGADLPAFTKMVVAMSKWMQAYWFLLIIFIGIVI
TTFLEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDV
ATGQQLQFAMRVTNKFPSMAVQMVAIGEESGALDAMLEKVATHYENEVDNAVDGLTSMMEPLIMSVLGILVGGLVIAMYL
PIFQMGSIVG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1002568 ABEF83_RS13900 WP_347454518.1 2832374..2833606(+) (pilC) [Acinetobacter thermotolerans strain ANC 7974]
ATGGCTTCAGTGAAAAAAGGTCAGATGATGCCAACCTTCCTTTATGAAGGGGTAGACCGCAAAGGGGTTAAAATTAAAGG
TGAAATGCCAGCACGCAACCTGGCCTTAGCCAAGGTGACACTGCGTAAGCAGGGCATTAGTATCAAGAGTATTCGAGAGA
AAAAGAAGAATATTCTTGAAGGTTTAATGAAGAAACGAGTTACCACACTAGACATCACGATTTTTACCCGACAACTAGCA
ACCATGATGAAAGCAGGTGTACCTTTGGTACAGGGTTTTGAAATCGTCGCCGAGGGTCTAGAAAACCCTGCTATGCGCGA
AGTAGTACTTGGCATTAAAGGTGAAGTTGAAGGGGGTAATACCTTTGCTGGCGCACTGCGTAAATACCCACAATATTTCG
ACAAACTGTTCTGTTCACTGGTGGAATCCGGTGAACAATCTGGTGCGCTGGAAACCATGCTAGATCGGGTAGCCCTATAT
AAAGAAAAAAGTGAGCTATTAAAACAGAAAATTAAAAAAGCGATGAAATACCCAATATCGGTAATCATTGTTGCAATTAT
TGTAACTATCATTCTGATGGTCAAAGTTGTTCCAGTTTTTGAAGAGCTGTTTGCTGGTTTCGGTGCTGACCTACCCGCTT
TTACTAAGATGGTAGTAGCCATGTCTAAATGGATGCAAGCTTATTGGTTCCTTTTGATTATTTTTATCGGAATTGTGATT
ACAACTTTTCTAGAAGCCAAAAAACGCAGCAAAAAATTCCGTGATTTTCTGGATAAAGCAGCCCTCAAAGCCCCAATTTT
TGGTGATCTAGTCTATAAAGCGATTATTGCCCGTTATAGCCGCACCTTAGCAACGACTTTTGCTGCCGGTGTACCGCTCA
TTGATGCTTTAGAATCTACTGCAGGGGCTACCAATAACGTGGTCTATGAAGAAGCAGTGATGAAAATCCGTGAAGACGTT
GCCACTGGTCAGCAACTGCAATTTGCGATGCGTGTCACCAATAAATTCCCATCGATGGCAGTACAGATGGTTGCCATTGG
CGAAGAATCTGGTGCACTGGATGCCATGTTGGAGAAAGTGGCTACCCATTATGAAAATGAAGTCGATAATGCTGTCGATG
GTTTAACATCAATGATGGAACCATTAATCATGTCTGTTTTAGGTATTTTAGTTGGTGGCTTAGTCATTGCGATGTATCTT
CCTATTTTCCAAATGGGTTCTATTGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

87.469

99.268

0.868
  pilC Acinetobacter baylyi ADP1

80.835

99.268

0.802
  pilC Pseudomonas stutzeri DSM 10701

60.804

97.073

0.59
  pilC Legionella pneumophila strain ERS1305867

54.774

97.073

0.532
  pilG Neisseria meningitidis 44/76-A

46.985

97.073

0.456
  pilG Neisseria gonorrhoeae MS11

46.985

97.073

0.456
  pilC Vibrio cholerae strain A1552

43.521

99.756

0.434
  pilC Vibrio campbellii strain DS40M4

41.294

98.049

0.405
  pilC Thermus thermophilus HB27

37.037

98.78

0.366

Multiple sequence alignment