Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABFV80_RS14685 Genome accession   NZ_CP156659
Coordinates   3283846..3285087 (+) Length   413 a.a.
NCBI ID   WP_347485047.1    Uniprot ID   -
Organism   Vandammella animalimorsus strain SK20231019-0001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3278846..3290087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFV80_RS14665 (ABFV80_002933) - 3279326..3279808 (-) 483 WP_343292824.1 uracil-DNA glycosylase family protein -
  ABFV80_RS14670 (ABFV80_002934) rimI 3280353..3280877 (-) 525 WP_238944884.1 ribosomal protein S18-alanine N-acetyltransferase -
  ABFV80_RS14675 (ABFV80_002935) - 3280877..3281788 (-) 912 WP_347485045.1 M23 family metallopeptidase -
  ABFV80_RS14680 (ABFV80_002936) pilB 3282085..3283815 (+) 1731 WP_347485046.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABFV80_RS14685 (ABFV80_002937) pilC 3283846..3285087 (+) 1242 WP_347485047.1 type II secretion system F family protein Machinery gene
  ABFV80_RS14690 (ABFV80_002938) - 3285087..3285965 (+) 879 WP_095542925.1 A24 family peptidase -
  ABFV80_RS14695 (ABFV80_002939) - 3286186..3287175 (-) 990 WP_347485048.1 tripartite tricarboxylate transporter substrate binding protein -
  ABFV80_RS14700 (ABFV80_002940) - 3287285..3288508 (-) 1224 WP_347485050.1 CaiB/BaiF CoA-transferase family protein -
  ABFV80_RS14705 (ABFV80_002941) yajC 3289117..3289458 (+) 342 WP_095539810.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45238.07 Da        Isoelectric Point: 9.9040

>NTDB_id=1001900 ABFV80_RS14685 WP_347485047.1 3283846..3285087(+) (pilC) [Vandammella animalimorsus strain SK20231019-0001]
MATTTAAASKGKTKSATKTFLYEWEGKDRNARLVRGEMTAAGENQVRATLRRQGIFATKIKKRRMKSGKKIKGRDIAVFT
RQLATMMRAGVPLLQSFDIVARGNPNPNVTRLLNNIKADVESGSPLSAAFRKYPLYFDNLYCNLVEAGEAAGILEDLLDR
LATYMEKMEAVKSKVKSALMYPIAVLVVAAVVLTVIMIWVIPAFKEVFTNFGADLPAPTLIVMAISDFVVQWFWLIAIVI
GAGSYFAYQAWRRNEKVQIFVDRTLLKLPIFGELVNMSSIARWTRTLSTMFAAGVPLVESLDAVGGASGNYVYRKATEDI
QKEVATGTSLTAAMTNANVFPSMVLQMTAIGEESGSLDHMLSKAADYYEAEVDTKVEGLSSLMEPIIIVVLGVLIGGIVV
AMYLPIFKLGQVV

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=1001900 ABFV80_RS14685 WP_347485047.1 3283846..3285087(+) (pilC) [Vandammella animalimorsus strain SK20231019-0001]
ATGGCAACCACTACTGCGGCAGCAAGCAAGGGAAAAACCAAAAGCGCCACCAAGACATTTCTTTATGAATGGGAGGGCAA
GGATCGCAATGCCCGCTTGGTGCGCGGGGAAATGACGGCCGCAGGTGAGAACCAGGTGAGAGCCACCTTGCGTCGTCAAG
GGATTTTTGCGACCAAGATCAAGAAGCGCCGCATGAAATCCGGCAAGAAGATCAAGGGCCGTGATATTGCTGTTTTCACA
CGTCAATTGGCTACCATGATGCGCGCTGGCGTGCCGCTGCTGCAGTCCTTCGATATTGTGGCGAGAGGCAACCCCAATCC
CAATGTCACTCGTCTGCTCAACAACATCAAGGCCGACGTGGAAAGTGGCAGTCCGTTGAGTGCGGCATTCAGAAAATATC
CTCTTTATTTTGATAATCTCTACTGCAATTTGGTGGAGGCAGGTGAGGCAGCAGGTATTCTCGAAGATCTGCTCGATCGT
TTGGCTACCTACATGGAAAAGATGGAGGCGGTCAAATCCAAGGTGAAATCAGCGCTGATGTACCCTATAGCAGTGCTGGT
GGTCGCAGCAGTGGTGTTGACGGTGATCATGATTTGGGTGATTCCGGCTTTCAAGGAAGTTTTCACCAATTTTGGTGCCG
ATTTGCCGGCTCCCACCCTGATTGTGATGGCCATCAGTGATTTTGTTGTGCAATGGTTTTGGTTGATTGCCATCGTAATT
GGGGCGGGAAGCTATTTCGCCTATCAAGCCTGGCGCCGCAATGAGAAAGTGCAGATATTCGTCGATCGCACTTTGCTGAA
GCTTCCCATCTTTGGTGAACTGGTGAACATGTCCAGTATTGCGCGCTGGACTCGCACACTGTCGACCATGTTTGCGGCTG
GGGTGCCGTTGGTAGAGTCGCTGGATGCCGTGGGGGGGGCATCGGGTAATTACGTGTATCGCAAGGCTACGGAAGATATC
CAGAAAGAAGTGGCGACGGGCACTAGCCTGACAGCGGCCATGACGAACGCCAATGTTTTCCCGTCCATGGTGCTGCAAAT
GACGGCCATTGGCGAGGAATCGGGTTCGCTGGACCATATGCTGTCCAAGGCGGCCGATTATTACGAGGCTGAGGTAGACA
CCAAGGTGGAGGGCCTGTCCTCTTTGATGGAGCCCATCATCATCGTGGTGCTGGGGGTTTTGATTGGTGGCATTGTGGTG
GCCATGTATTTGCCAATCTTCAAGCTGGGGCAGGTGGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(283-405)

Type II secretion system (T2SS), protein F (T2SSF)

(79-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

51.733

97.821

0.506
  pilG Neisseria gonorrhoeae MS11

51.01

95.884

0.489
  pilG Neisseria meningitidis 44/76-A

51.01

95.884

0.489
  pilC Acinetobacter baumannii D1279779

49.37

96.126

0.475
  pilC Acinetobacter baylyi ADP1

48.744

96.368

0.47
  pilC Legionella pneumophila strain ERS1305867

47.772

97.821

0.467
  pilC Vibrio cholerae strain A1552

42.317

96.126

0.407
  pilC Vibrio campbellii strain DS40M4

39.899

95.884

0.383

Multiple sequence alignment