Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABFU49_RS16570 Genome accession   NZ_CP156008
Coordinates   3801321..3802583 (+) Length   420 a.a.
NCBI ID   WP_057671824.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain NBC831     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3796321..3807583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU49_RS16545 (ABFU49_16510) - 3797403..3797765 (+) 363 WP_217694196.1 hypothetical protein -
  ABFU49_RS16550 (ABFU49_16515) - 3797765..3798205 (+) 441 WP_274375534.1 hypothetical protein -
  ABFU49_RS16555 (ABFU49_16520) - 3798287..3798502 (+) 216 WP_274375533.1 hypothetical protein -
  ABFU49_RS16560 (ABFU49_16525) pilB 3798685..3800415 (-) 1731 WP_274375747.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABFU49_RS16565 (ABFU49_16530) pilA 3800551..3800979 (-) 429 WP_057671660.1 pilin Machinery gene
  ABFU49_RS16570 (ABFU49_16535) pilC 3801321..3802583 (+) 1263 WP_057671824.1 type II secretion system F family protein Machinery gene
  ABFU49_RS16575 (ABFU49_16540) - 3802590..3803453 (+) 864 WP_057671659.1 A24 family peptidase -
  ABFU49_RS16580 (ABFU49_16545) coaE 3803467..3804090 (+) 624 WP_040940796.1 dephospho-CoA kinase -
  ABFU49_RS16585 (ABFU49_16550) - 3804622..3805023 (+) 402 WP_012437599.1 SymE family type I addiction module toxin -
  ABFU49_RS16590 (ABFU49_16555) - 3805098..3805388 (+) 291 WP_011038219.1 DUF1778 domain-containing protein -
  ABFU49_RS16595 (ABFU49_16560) - 3805385..3805876 (+) 492 WP_011038220.1 GNAT family N-acetyltransferase -
  ABFU49_RS16600 (ABFU49_16565) - 3806019..3807353 (-) 1335 WP_012437598.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46232.76 Da        Isoelectric Point: 10.2689

>NTDB_id=1001124 ABFU49_RS16570 WP_057671824.1 3801321..3802583(+) (pilC) [Xanthomonas campestris pv. campestris strain NBC831]
MSVVRNAIKKQVVDRSTGQQLQLFLWEGTDKRGIKMKGEQTARNMNMLRAELRRQGINPSVVKPKPKPLFGAAGKKITPK
DIAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQVRTDIEGGSSLYESISRHPVQFDELYRNLVRAGEGAGVL
ETVLDTVATYKENIEALKGKIKKALFYPAMVIAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVGASRFMVSYWW
IMLFVVAGSIIGFIFAYKRSPSMQHAMDRLILRVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNRVYE
DAVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDTMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGVV
VGGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=1001124 ABFU49_RS16570 WP_057671824.1 3801321..3802583(+) (pilC) [Xanthomonas campestris pv. campestris strain NBC831]
ATGTCTGTCGTACGCAATGCTATTAAGAAGCAAGTAGTCGACCGCAGTACTGGTCAACAGCTACAGCTGTTTCTTTGGGA
AGGAACCGATAAGCGCGGAATCAAGATGAAAGGCGAGCAGACTGCGCGCAACATGAATATGTTGCGTGCGGAACTTCGTC
GTCAAGGCATCAATCCGTCGGTAGTCAAACCCAAACCCAAGCCGCTGTTCGGTGCTGCAGGCAAGAAAATTACGCCAAAA
GACATTGCATTTTTCAGTCGCCAGATGGCGACTATGATGAAATCAGGGGTGCCGATTGTAAGCTCGCTTGAGATCATCGG
TGAGGGCCACAAAAATCCACGCATGAAAAAGATGGTGGGCCAAGTGAGAACGGATATCGAGGGCGGCTCATCTCTTTATG
AATCAATCAGCAGACATCCCGTGCAGTTTGATGAGCTCTACCGAAACCTCGTCCGAGCAGGTGAAGGTGCAGGCGTTCTA
GAGACAGTGCTAGATACAGTTGCCACTTACAAAGAAAACATAGAGGCCCTTAAGGGAAAGATTAAGAAGGCCCTGTTTTA
TCCAGCCATGGTGATTGCAGTCGCCCTTATTGTCAGCGCCATCCTGCTCATTTTTGTGGTCCCTCAATTCGAAGAGGTTT
TTAAGGGTTTCGGCGCCGAGTTACCCGCCTTCACCCAAATGATTGTAGGAGCATCACGCTTCATGGTGAGCTACTGGTGG
ATCATGCTGTTCGTTGTAGCAGGCTCCATCATTGGCTTCATCTTTGCTTATAAACGCTCACCAAGCATGCAGCATGCCAT
GGATAGGCTGATATTGAGAGTGCCTGTTATCGGGCAAATCATGCATAACAGCTCGATTGCGCGCTTCGCACGCACGACTG
CGGTTACCTTTAAAGCCGGAGTCCCATTAGTGGAAGCATTAGGCATTGTTGCTGGCGCCACCGGCAACCGCGTCTACGAA
GATGCGGTACTCCGTATGCGCGACGATGTATCTGTTGGCTACCCGGTCAACATGGCGATGAAACAGGTAAACCTGTTCCC
ACACATGGTTATTCAAATGACTGCGATTGGCGAAGAAGCGGGCGCTCTTGATACCATGCTCTTCAAGGTGGCGGAATACT
TCGAGCAAGAGGTAAACAATGCAGTAGATGCACTTAGCAGCCTGCTCGAACCGATGATTATGGTCTTTATTGGCGTCGTC
GTAGGCGGTATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(85-208)

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.408

94.524

0.514
  pilC Legionella pneumophila strain ERS1305867

52.882

95

0.502
  pilC Acinetobacter baylyi ADP1

51.244

95.714

0.49
  pilC Acinetobacter baumannii D1279779

49.628

95.952

0.476
  pilG Neisseria gonorrhoeae MS11

44.638

95.476

0.426
  pilG Neisseria meningitidis 44/76-A

44.14

95.476

0.421
  pilC Vibrio campbellii strain DS40M4

40.786

96.905

0.395
  pilC Vibrio cholerae strain A1552

40.75

95.238

0.388

Multiple sequence alignment