Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABFU38_RS05465 Genome accession   NZ_CP155967
Coordinates   1298367..1299620 (-) Length   417 a.a.
NCBI ID   WP_407469260.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. raphani strain BXC#141     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1293367..1304620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU38_RS05440 (ABFU38_05435) - 1294308..1294985 (+) 678 WP_003490678.1 response regulator transcription factor -
  ABFU38_RS05445 (ABFU38_05440) - 1294978..1296312 (+) 1335 WP_019237347.1 HAMP domain-containing sensor histidine kinase -
  ABFU38_RS05450 - 1296411..1296578 (-) 168 Protein_1060 SymE family type I addiction module toxin -
  ABFU38_RS05455 (ABFU38_05450) coaE 1296860..1297483 (-) 624 WP_225042504.1 dephospho-CoA kinase -
  ABFU38_RS05460 (ABFU38_05455) - 1297497..1298360 (-) 864 WP_407469259.1 prepilin peptidase -
  ABFU38_RS05465 (ABFU38_05460) pilC 1298367..1299620 (-) 1254 WP_407469260.1 type II secretion system F family protein Machinery gene
  ABFU38_RS05470 (ABFU38_05465) pilA2 1299958..1300410 (+) 453 WP_407469261.1 pilin Machinery gene
  ABFU38_RS05475 (ABFU38_05470) - 1300481..1301089 (+) 609 WP_407469262.1 methyltransferase family protein -
  ABFU38_RS05480 (ABFU38_05475) - 1301093..1302253 (+) 1161 WP_407469263.1 hypothetical protein -
  ABFU38_RS05485 (ABFU38_05480) pilB 1302307..1304040 (+) 1734 WP_407469264.1 type IV-A pilus assembly ATPase PilB Machinery gene

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45662.01 Da        Isoelectric Point: 10.2397

>NTDB_id=1000423 ABFU38_RS05465 WP_407469260.1 1298367..1299620(-) (pilC) [Xanthomonas campestris pv. raphani strain BXC#141]
MSTARSVMKNQTAERNTIQSFVWEGTDKRGVKMKGEQAARNVNMVRAELRRQGIMPSSVKAKPKPLFGAAGKKITPKDIA
FFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMKKMVGQIKSDIEGGSSLHEAISKHPVQFDELYRNLVKAGEGAGVLETV
LDTIASYKENIEALKGKIKKALFYPAMVIAVALIVSAILLIFVVPQFEEVFKSFGAELPAFTQMIVNSSKFMVSYWWLLV
IVLGGSIVGSIFAYKRSLRMQHAMDRLILKVPVIGQIMHNSSIARFSRTTAVTFKAGVPLVEALSIVAGATGNKVYEEAV
LRMRDDVSVGYPVNMSMKQVNIFPHMVIQMTAIGEEAGALDTMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGTIVGG
MVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=1000423 ABFU38_RS05465 WP_407469260.1 1298367..1299620(-) (pilC) [Xanthomonas campestris pv. raphani strain BXC#141]
ATGTCCACAGCTCGTAGCGTCATGAAAAATCAGACAGCTGAACGGAACACTATCCAATCCTTTGTTTGGGAAGGGACAGA
TAAACGCGGCGTTAAGATGAAAGGGGAGCAAGCTGCGCGCAATGTGAATATGGTGCGTGCTGAGCTCCGTCGCCAAGGTA
TCATGCCATCTTCGGTGAAAGCCAAGCCCAAACCATTATTTGGCGCTGCAGGCAAAAAGATAACACCAAAAGATATAGCT
TTTTTCAGCCGACAAATGGCGACCATGATGAAGTCTGGCGTGCCAATTGTCGGATCGCTTGAGATCATCGGCGAGGGTCA
CAAAAACCCTCGCATGAAGAAGATGGTAGGTCAGATAAAAAGCGATATTGAAGGCGGCTCGTCACTTCACGAGGCCATTA
GTAAACACCCGGTGCAGTTCGATGAACTGTATCGCAACCTCGTAAAGGCTGGCGAAGGGGCCGGTGTATTGGAAACGGTG
CTGGATACCATTGCCAGCTATAAAGAGAATATCGAAGCACTGAAGGGGAAAATCAAGAAAGCGCTTTTTTACCCGGCCAT
GGTGATCGCAGTAGCGCTCATCGTCAGCGCAATTCTTCTGATTTTTGTAGTACCACAGTTTGAAGAAGTTTTTAAGAGCT
TCGGCGCAGAGCTACCCGCTTTTACCCAGATGATTGTAAATTCATCTAAATTCATGGTTAGTTACTGGTGGCTACTTGTC
ATAGTACTTGGCGGCTCTATTGTAGGATCTATATTTGCCTACAAACGATCCTTACGTATGCAGCATGCCATGGATCGCTT
GATATTGAAGGTGCCAGTAATTGGTCAAATTATGCATAACAGTTCTATCGCACGTTTCTCTCGAACTACCGCAGTTACCT
TCAAGGCTGGCGTACCCTTAGTGGAAGCTTTAAGTATTGTTGCTGGGGCTACAGGAAACAAGGTTTACGAGGAAGCTGTC
CTCAGAATGCGCGATGATGTTTCCGTTGGCTATCCAGTTAACATGTCTATGAAACAGGTTAACATCTTCCCCCATATGGT
CATTCAGATGACCGCTATTGGCGAAGAAGCAGGTGCGCTTGACACAATGCTGTTCAAGGTGGCGGAGTACTTCGAGCAGG
AAGTAAACAACGCAGTAGACGCCTTGAGTAGTTTGCTTGAACCAATGATCATGGTCTTCATCGGCACCATCGTCGGCGGC
ATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(82-205)

Type II secretion system (T2SS), protein F (T2SSF)

(286-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.659

98.321

0.528
  pilC Legionella pneumophila strain ERS1305867

52.393

95.204

0.499
  pilC Acinetobacter baylyi ADP1

52.141

95.204

0.496
  pilC Acinetobacter baumannii D1279779

51.256

95.444

0.489
  pilG Neisseria gonorrhoeae MS11

44.527

96.403

0.429
  pilG Neisseria meningitidis 44/76-A

43.921

96.643

0.424
  pilC Vibrio cholerae strain A1552

41

95.923

0.393
  pilC Vibrio campbellii strain DS40M4

38.5

95.923

0.369

Multiple sequence alignment