TAfinder detailed results
Overview
| Job ID | wrVbGpMxFf | ||
| Sequence name | NZ_CP026085.1 Escherichia coli strain DH5alpha chromosome, complete genome | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | higA (AT325) | Predicted domain | PF13560 (HTH_31) |
| Locus tag | orf2513 | Length | 185 a.a. |
| Coordinates | 2648358..2648915 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| orf2506 | 2644011..2645276 | - | 1266 | ORF2506 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf2507 | 2645314..2646594 | - | 1281 | ORF2507 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf2508 | 2646596..2648083 | - | 1488 | ORF2508 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf2509 | 2648358..2648915 | - | 558 | ORF2509 | Predicted ORF by PRODIGAL Version 1.20 | Antitoxin |
| orf2510 | 2648942..2649706 | - | 765 | ORF2510 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf2511 | 2649918..2651336 | + | 1419 | ORF2511 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf2512 | 2651639..2653024 | + | 1386 | ORF2512 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf2513 | 2653158..2653403 | + | 246 | ORF2513 | Predicted ORF by PRODIGAL Version 1.20 | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 20091.58 Da Isoelectric Point: 5.2341
>ORF2509 Orphan_TA_59 Antitoxin
MSDEGLAPGKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYG
LSLSEFFSEPEKPDEPQVVINQDDLIEMGSQGVSMKLVHNGNPNRTLAMIFETYQPGTTT
GERIKHQGEEIGTVLEGEIVLTINGQDYHLVAGQSYAINTGIPHSFSNTSAGICRIISAH
TPTTF
MSDEGLAPGKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYG
LSLSEFFSEPEKPDEPQVVINQDDLIEMGSQGVSMKLVHNGNPNRTLAMIFETYQPGTTT
GERIKHQGEEIGTVLEGEIVLTINGQDYHLVAGQSYAINTGIPHSFSNTSAGICRIISAH
TPTTF
Download Length: 558 bp
>ORF2509 Orphan_TA_59 Antitoxin
TTAAAACGTGGTGGGCGTATGGGCGCTGATAATTCGGCAAATACCTGCCGACGTATTACT
GAAACTGTGCGGGATGCCGGTATTAATGGCATAACTTTGCCCCGCGACGAGGTGGTAATC
CTGACCATTAATCGTCAGAACAATTTCACCTTCCAGTACAGTGCCTATTTCCTCACCCTG
ATGCTTAATTCTTTCCCCAGTGGTTGTGCCCGGCTGGTACGTTTCAAAGATCATCGCCAG
CGTGCGATTCGGGTTACCGTTATGAACCAGCTTCATTGACACACCCTGACTACCCATCTC
AATTAAGTCGTCCTGATTAATGACGACCTGCGGCTCATCAGGTTTTTCCGGCTCGGAAAA
GAATTCCGAGAGTGACAGACCATACACCTTCAGCAGCTTTTGCAGCGTACTGATGGCAGG
GCTGACTTTATCTTGTTCTATCGTACTGATAGCACTGTGAGTCAGCCCGGAGAGTTCGGC
GGCACGACGTTGTGAAAGCCCCTGCTGCTGGCGGATTTCCGACAAGCGTTTTCCTGGCGC
CAGTCCCTCATCACTCAT
TTAAAACGTGGTGGGCGTATGGGCGCTGATAATTCGGCAAATACCTGCCGACGTATTACT
GAAACTGTGCGGGATGCCGGTATTAATGGCATAACTTTGCCCCGCGACGAGGTGGTAATC
CTGACCATTAATCGTCAGAACAATTTCACCTTCCAGTACAGTGCCTATTTCCTCACCCTG
ATGCTTAATTCTTTCCCCAGTGGTTGTGCCCGGCTGGTACGTTTCAAAGATCATCGCCAG
CGTGCGATTCGGGTTACCGTTATGAACCAGCTTCATTGACACACCCTGACTACCCATCTC
AATTAAGTCGTCCTGATTAATGACGACCTGCGGCTCATCAGGTTTTTCCGGCTCGGAAAA
GAATTCCGAGAGTGACAGACCATACACCTTCAGCAGCTTTTGCAGCGTACTGATGGCAGG
GCTGACTTTATCTTGTTCTATCGTACTGATAGCACTGTGAGTCAGCCCGGAGAGTTCGGC
GGCACGACGTTGTGAAAGCCCCTGCTGCTGGCGGATTTCCGACAAGCGTTTTCCTGGCGC
CAGTCCCTCATCACTCAT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT325 | Streptococcus pneumoniae TIGR4 |
34.921 |
64.948 |
0.119 |
| AT1067 | Haemophilus influenzae Rd KW20 |
41.818 |
56.122 |
0.124 |
| AT10037 | Burkholderia pseudomallei K96243 |
40.385 |
49.524 |
0.114 |
| AT162 | Xylella fastidiosa 9a5c |
42.553 |
35.338 |
0.108 |
| AT10098 | Escherichia coli Nissle 1917 |
30.508 |
67.045 |
0.097 |
| AT10195 | Escherichia coli strain BL21 (TaKaRa) |
30.508 |
67.045 |
0.097 |
| AT1040 | Escherichia coli str. K-12 substr. MG1655 |
30.508 |
67.045 |
0.097 |
| AT6088 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
40.541 |
44.048 |
0.081 |
| AT10038 | Shewanella putrefaciens CN-32 |
30.508 |
38.816 |
0.097 |