TAfinder detailed results

Overview

Job ID 9mizKMmBqU
Sequence name Escherichia coli strain DH5alpha chromosome, complete genome.
Predicted type I

Toxin (Protein)


Predicted family hokC (T10209) Predicted domain -
Locus tag C1467_RS21080 Length 50 a.a.
Coordinates 4067694..4067846 (+)

Antitoxin (RNA)


Predicted family sokC (AT10209) Predicted domain -
Locus tag NuclAT_21 Length 58 bp
Coordinates 4067588..4067645 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C1467_RS21060 4062614..4063966 + 1353 Protein_3883 fimbria/pilus outer membrane usher protein -
C1467_RS21065 4063979..4064938 + 960 WP_000871670.1 hypothetical protein -
C1467_RS21070 4064977..4065876 - 900 WP_001300855.1 transcriptional activator NhaR -
C1467_RS21075 4065942..4067108 - 1167 WP_000681360.1 Na+/H+ antiporter NhaA -
- 4067588..4067645 - 177 - - Antitoxin
C1467_RS21080 4067694..4067846 + 153 WP_000809168.1 type I toxin-antitoxin system toxin MokC Toxin
C1467_RS21085 4067950..4069080 - 1131 WP_001118464.1 molecular chaperone DnaJ -
C1467_RS21090 4069169..4071085 - 1917 WP_000516135.1 molecular chaperone DnaK -
C1467_RS21095 4071462..4071866 + 405 WP_000843559.1 DUF2541 family protein -
C1467_RS21100 4071892..4072605 + 714 WP_001102383.1 acidic protein MsyB -

Domains

The domains were predicted by HMMER and were sorted by score.

Toxin


No domain identified.



Sequences

Toxin        


Download         Length: 50 a.a.        Molecular weight: 5501.57 Da        Isoelectric Point: 7.1312

>WP_000809168.1 TA_31 Toxin
MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE*

Download         Length: 153 bp

>WP_000809168.1 TA_31 Toxin
ATGAAGCAGCATAAGGCGATGATTGTCGCCCTGATCGTCATCTGTATCACCGCCGTAGTG
GCGGCGCTGGTAACGAGAAAAGACCTCTGTGAGGTTCACATCCGAACTGGCCAGACGGAG
GTTGCTGTTTTCACGGCTTACGAATCCGAGTAA

Antitoxin


Download         Length: 58 bp

>NuclAT_21 TA_31 Antitoxin
TAGAGAAAAGCCCCGAGTGATATTTTACTATCAACCCGAGGCCCCCTATATGCTGAAC

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
T10209 Escherichia coli strain ECOR24

100

100

0.98
T10039 Escherichia coli O157:H7 str. Sakai

80

98.039

0.784
T6324 Escherichia coli

38.298

90.385

0.353
T6363 uncultured bacterium

38.298

90.385

0.353
T10210 Hafnia alvei

39.583

92.308

0.373
T10208 Escherichia coli C

41.86

86

0.353
T6369 Escherichia coli K-12

36.957

93.878

0.333
T10124 Erwinia amylovora ATCC 49946

57.692

81.25

0.294
T6370 Escherichia coli

31.111

90

0.275
Protein Organism Identities (%) Coverage (%) Ha-value