MGE detailed information
MGE type: Genomic_island MGE length: 11286 bp
Accession: NZ_CP063332 Location: 2267071..2278356 Organism: Escherichia coli strain BS74R-D Replicon: chromosome
Accession: NZ_CP063332 Location: 2267071..2278356 Organism: Escherichia coli strain BS74R-D Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IN878_RS11115 () | 2262903..2264234 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| IN878_RS11120 () | 2264256..2265245 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| IN878_RS11125 () | 2265344..2266282 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| IN878_RS11130 () | 2266471..2266815 | + | 345 | WP_000145840.1 | transcriptional activator TdcR | - |
| IN878_RS11135 () | 2267071..2267610 | + | 540 | WP_000675733.1 | hypothetical protein | - |
| IN878_RS11140 () | 2267632..2268819 | + | 1188 | WP_000484598.1 | YhaC family protein | - |
| IN878_RS11150 () | 2269842..2270987 | - | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| IN878_RS11155 () | 2271084..2271974 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| IN878_RS11160 () | 2272004..2272774 | - | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| IN878_RS11165 () | 2272790..2274124 | - | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| IN878_RS11170 () | 2274499..2274732 | + | 234 | Protein_2186 | galactarate dehydratase | - |
| IN878_RS11175 () | 2274745..2275953 | - | 1209 | WP_001339197.1 | IS4 family transposase IS10R | Transposase |
| IN878_RS11180 () | 2276002..2277408 | + | 1407 | Protein_2188 | galactarate dehydratase | - |
| IN878_RS11185 () | 2277557..2277892 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| IN878_RS11190 () | 2277892..2278356 | + | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| IN878_RS11195 () | 2278411..2279220 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| IN878_RS11200 () | 2279469..2280749 | + | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| IN878_RS11205 () | 2280772..2281245 | + | 474 | WP_001422480.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| IN878_RS11210 () | 2281256..2282035 | + | 780 | WP_000406209.1 | PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC | - |
| IN878_RS11215 () | 2282025..2282903 | + | 879 | WP_001295548.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| IN878_RS11220 () | 2282921..2283355 | + | 435 | WP_000948824.1 | PTS sugar transporter subunit IIA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.007 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.007 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.004 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.004 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.004 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.004 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.007 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.007 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.004 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.007 |