MGE detailed information
MGE type: Genomic_island MGE length: 16253 bp
Accession: NC_010473 Location: 4633070..4649322 Organism: Escherichia coli str. K-12 substr. DH10B Replicon: chromosome
Accession: NC_010473 Location: 4633070..4649322 Organism: Escherichia coli str. K-12 substr. DH10B Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECDH10B_RS22965 (ECDH10B_4505) | 4628761..4630074 | - | 1314 | WP_000460843.1 | galactitol-specific PTS transporter subunit IIC | - |
| ECDH10B_RS22970 (ECDH10B_4506) | 4630086..4630364 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB | - |
| ECDH10B_RS22975 (ECDH10B_4507) | 4630361..4631482 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| ECDH10B_RS26330 | 4631727..4631843 | - | 117 | Protein_4353 | VOC family protein | - |
| ECDH10B_RS25810 | 4631881..4632099 | - | 219 | Protein_4354 | hypothetical protein | - |
| ECDH10B_RS22980 (ECDH10B_4508) | 4632268..4633014 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| ECDH10B_RS22985 (ECDH10B_4509) | 4633070..4633615 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| ECDH10B_RS22990 (ECDH10B_4510) | 4633627..4633884 | - | 258 | WP_001054376.1 | hypothetical protein | Toxin Detail |
| ECDH10B_RS26170 | 4634261..4634506 | - | 246 | Protein_4358 | GNAT family N-acetyltransferase | - |
| ECDH10B_RS23005 (ECDH10B_4511) | 4634622..4635862 | + | 1241 | Protein_4359 | helicase YjhR | - |
| ECDH10B_RS23010 (ECDH10B_4512) | 4636445..4637425 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| ECDH10B_RS23015 (ECDH10B_4513) | 4637490..4638596 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| ECDH10B_RS23020 (ECDH10B_4514) | 4638616..4639332 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| ECDH10B_RS23035 | 4640602..4641810 | - | 1209 | WP_006250222.1 | IS4 family transposase IS10R | Transposase |
| ECDH10B_RS23040 (ECDH10B_4515) | 4641917..4643926 | - | 2010 | Protein_4364 | phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase | - |
| ECDH10B_RS23045 (ECDH10B_4516) | 4644180..4644674 | - | 495 | WP_001308243.1 | DUF2501 domain-containing protein | - |
| ECDH10B_RS23050 (ECDH10B_4517) | 4644723..4645460 | - | 738 | WP_000799911.1 | IS21 family transposase ISSme2 | Transposase |
| ECDH10B_RS23055 (ECDH10B_4518) | 4645463..4646002 | - | 540 | WP_000098818.1 | primosomal protein DnaT | - |
| ECDH10B_RS23060 (ECDH10B_4519) | 4646109..4646582 | - | 474 | WP_000538191.1 | threonine/serine exporter | - |
| ECDH10B_RS23065 (ECDH10B_4520) | 4646573..4647343 | - | 771 | WP_001338213.1 | threonine/serine exporter ThrE family protein | - |
| ECDH10B_RS23070 (ECDH10B_4521) | 4647962..4648687 | + | 726 | WP_000936635.1 | Putative transcription factor YjjQ | VF |
| ECDH10B_RS23075 (ECDH10B_4522) | 4648645..4649322 | + | 678 | WP_001301727.1 | Transcriptional activator protein BglJ | VF |
| ECDH10B_RS23080 (ECDH10B_4523) | 4649360..4650148 | - | 789 | WP_000331618.1 | siderophore-iron reductase FhuF | - |
| ECDH10B_RS23085 (ECDH10B_4524) | 4650289..4650525 | + | 237 | WP_001393508.1 | DUF1435 domain-containing protein | - |
| ECDH10B_RS23105 (ECDH10B_4528) | 4651154..4652185 | - | 1032 | WP_001272330.1 | 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC | - |
| ECDH10B_RS23110 (ECDH10B_4529) | 4652288..4652701 | + | 414 | WP_000204012.1 | DNA polymerase III subunit psi | - |
| ECDH10B_RS23115 (ECDH10B_4530) | 4652670..4653116 | + | 447 | WP_001092461.1 | ribosomal protein S18-alanine N-acetyltransferase | - |
| ECDH10B_RS23120 (ECDH10B_4531) | 4653131..4653808 | + | 678 | WP_000870710.1 | pyrimidine 5'-nucleotidase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20047 | CP009789 | 4505469..4521845 | 0.002 | |
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20047 | CP009789 | 4505469..4521845 | 0.002 | |
| Escherichia coli ER2796 strain K-12 ER2796 | Genomic island | TA49384 | NZ_CP009644 | 4505471..4521847 | 0.002 | |
| Escherichia coli K-12 strain K-12 ER3413 | Genomic island | TA49811 | NZ_CP009789 | 4505469..4521845 | 0.002 | |
| Escherichia coli strain NEB10-beta | Genomic island | TA157122 | NZ_CP053604 | 4614697..4630949 | 0 | |
| Escherichia coli strain HE_100-10 | Genomic island | TA262657 | NZ_CP110014 | 4635171..4651422 | 0 | |
| Escherichia coli strain HE_150 | Genomic island | TA262683 | NZ_CP110015 | 4635183..4651434 | 0 | |
| Escherichia coli strain HE_100 | Genomic island | TA262709 | NZ_CP110016 | 4635178..4651429 | 0 | |
| Escherichia coli strain HE_50 | Genomic island | TA262735 | NZ_CP110017 | 4635185..4651437 | 0 | |
| Escherichia coli strain DH10B | Genomic island | TA262761 | NZ_CP110018 | 4634420..4650672 | 0 | |
| Escherichia coli strain CM5 | Genomic island | TA266936 | NZ_CP114892 | 3767291..3783543 | 0 | |
| Escherichia coli strain CM19 | Genomic island | TA266985 | NZ_CP114894 | 3893335..3917274 | 0.009 | |
| Escherichia coli strain CM56 | Genomic island | TA266992 | NZ_CP114895 | 611516..627768 | 0 | |
| Escherichia coli strain CM93 | Genomic island | TA267037 | NZ_CP114896 | 3999698..4015950 | 0 |