Detailed information of regulator
|Regulatory pathway (from literatures)||QS regulatory pathway|
|KEGG pathway (determined by BlastKOALA)||Two-component system (map02020); Quorum sensing (map02024); Biofilm formation - Vibrio cholerae (map05111)|
|Related T6SS||T6SS01280 (Type i5); T6SS01281 (Type i1)|
|Strain||Vibrio coralliilyticus OCN008|
|Sequence||Protein sequence (202 a.a.); Nucleotide sequence (606 bp)|
|Description||The ΔvtpR mutant recovery was reduced by nearly one log-fold in the challenge against T6SS+ V.cholerae in comparison to the challenge against T6SS- V.cholerae and that it was unable to kill V.cholerae shows VtpR did play a role in the success of V.coralliilyticus survival against T6SS+ V.cholerae.|
External database links
|Locus tag (Gene)||N779_15250 (VtpR)|
|Coordinates (Strand)||7579..8184 (-)|
|KEGG pathway (determined by BlastKOALA)||map02020; map02024; map05111|
|Target||Regulation (↓/↑)||Target sequence|
Pfam domain hit(s) of regulator
|Domain||Pfam ID||E-value||Aligned region|
- Transmembrane helices are predicted using TMHMM 2.0 software.
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
|Prediction||Probability||Cleavage site||Signal peptide sequence|
Protein sequence of regulator: 202 a.a. .
Nucleotide sequence of regulator: 606 bp .