Detailed information of regulator


Summary

Regulator ID REG0056 experimental
Regulator type protein
Regulatory pathway (from literatures) Tpp
KEGG pathway (determined by BlastKOALA) Biofilm formation - Pseudomonas aeruginosa (map02025)
Related T6SS T6SS00003 experimental (Type i3)
Strain Pseudomonas aeruginosa PAO1
Replicon chromosome
Sequence Protein sequence (227 a.a.); Nucleotide sequence (681 bp)
Description -
Reference
External database links

Locus tag (Gene) PA0076 (TagF)
Coordinates (Strand) 90844..91524 (-)
NCBI ID 15595274
RefSeq NC_002516
Uniprot ID Q9I756_PSEAE
KEGG ID pae:PA0076
KEGG pathway (determined by BlastKOALA) map02025
PDB ID 2QNU, 6IZ8
  Target
Target Regulation (↓/↑) Target sequence
hcp1 (PA0086) secretion ↑ -
Pfam domain hit(s) of regulator

Domain Pfam ID E-value Aligned region
TagF_N PF09867.11 1.6e-48 5..139
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-226 MNSVGFYGKLAGRGDFVSRGLPNTFVEPWDAWLASGMRASQDELGAAWLDAYLTSPLWRFAIAPGLLGGEAVTGVVMPSIDRVGRYFPLTVACLLPANADLGGLVGGDDGWFEQVESLLLSTLEPEAEVEAFEQAVAQLPAPPCGPRIEQSLISGNLLRSEAVTPAQRLAALAQHACDGASHWWGRGSARISAGLMRYQGLPPAPAFGRFLTGEGEVIPLFPGIPG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9865 - -


  Protein sequence of regulator: 227 a.a.    .

>REG0056 NC_002516:c91524-90844 [Pseudomonas aeruginosa PAO1]
MNSVGFYGKLAGRGDFVSRGLPNTFVEPWDAWLASGMRASQDELGAAWLDAYLTSPLWRFAIAPGLLGGEAVTGVVMPSI
DRVGRYFPLTVACLLPANADLGGLVGGDDGWFEQVESLLLSTLEPEAEVEAFEQAVAQLPAPPCGPRIEQSLISGNLLRS
EAVTPAQRLAALAQHACDGASHWWGRGSARISAGLMRYQGLPPAPAFGRFLTGEGEVIPLFPGIPG*

  Nucleotide sequence of regulator: 681 bp    .

>REG0056 NC_002516:c91524-90844 [Pseudomonas aeruginosa PAO1]
TTGAACAGCGTCGGTTTCTACGGCAAGCTGGCCGGCCGCGGCGATTTCGTCAGCCGCGGCCTGCCGAACACCTTCGTCGA
ACCCTGGGACGCCTGGCTGGCCAGCGGCATGCGCGCCAGCCAGGACGAGCTCGGCGCGGCCTGGCTCGACGCCTACCTGA
CCAGCCCGCTGTGGCGCTTCGCCATCGCCCCCGGCCTGCTCGGCGGCGAAGCGGTGACCGGAGTGGTGATGCCGAGCATC
GACCGGGTCGGTCGCTATTTCCCGCTGACCGTCGCCTGCCTGCTACCGGCGAACGCCGACCTCGGCGGGCTGGTCGGCGG
CGACGACGGCTGGTTCGAACAGGTCGAGAGCCTGCTGCTCTCCACCCTCGAACCGGAGGCCGAGGTCGAGGCCTTCGAGC
AGGCGGTGGCGCAGCTCCCGGCACCGCCCTGCGGACCGCGCATCGAACAATCGCTGATCAGCGGCAACCTGCTGCGCAGC
GAAGCGGTGACCCCGGCGCAGCGCCTCGCCGCGCTGGCCCAGCACGCCTGCGACGGCGCCAGCCACTGGTGGGGACGCGG
CTCGGCACGGATCTCCGCCGGCCTGATGCGCTACCAGGGCCTGCCGCCGGCGCCGGCGTTCGGACGATTCCTCACCGGAG
AGGGCGAGGTGATCCCGCTCTTTCCCGGCATACCCGGTTAA