Detailed information of regulator


Summary

Regulator ID REG0048 experimental
Regulator type protein
Regulatory pathway (from literatures) Tpp
KEGG pathway (determined by BlastKOALA) -
Related T6SS T6SS00003 experimental (Type i3)
Strain Pseudomonas aeruginosa PAO1
Replicon chromosome
Sequence Protein sequence (305 a.a.); Nucleotide sequence (915 bp)
Description Individual isogenic PAO1 mutants (ΔtagT, ΔtagS and ΔtagQ) were impaired in Hcp1 export and TagQ is an outer membrane lipoprotein that localizes independent of TagTS and is essential for OM localization of TagR. TagT, TagS and TagQ act upstream of PpkA in the TPP.
Reference
External database links

Locus tag (Gene) PA0070 (TagQ)
Coordinates (Strand) 82404..83318 (-)
NCBI ID 15595268
RefSeq NC_002516
Uniprot ID Q9I762_PSEAE
KEGG ID pae:PA0070
KEGG pathway (determined by BlastKOALA) -
PDB ID -
  Target
JSONXMLCSVTXTSQLMS-Excel
Loading, please wait
Target
Regulation (↓/↑)
Target sequence
PA0071 (tagR)↓15595269
Showing 1 to 1 of 1 rows
Pfam domain hit(s) of regulator

Loading, please wait
Domain
Pfam ID
E-value
Aligned region
Gly-zipper_OmpPF13488.85.9e-0670..116
Showing 1 to 1 of 1 rows
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Loading, please wait
Prediction                
Region    
Sequence
Outside1-304MSQPSENRLITSARYALCLLTASGVLLSGCASSGVGSVAQTTRAEYYPSCYEPVSHLRSTDNAVRNSAITGAITGGLLGGLAGGLASDENRGRNAALAAAGGALAGGAAGYYMEKQKQISDDRARIGSYGTDVDRSTVEINRSVAYAKSAQSCYQSQFKALLDGRKNKSINEAEGRKRLAEIVSGLQETNALLVAANGRAGENISNYTQAYEKDLQQVGVPRAEVTKVAEAENRASTTKGGSKPKTGSNPKVPKEAVATEQTIRKAQDAQSEGNKVASQGQGMIREVCNSPDMGDWAPPSCAKA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Loading, please wait
Prediction       
Probability
Cleavage site
Signal peptide sequence
LIPO(Sec/SPII)0.9869pos: 29-30. LSG-CA.MSQPSENRLITSARYALCLLTASGVLLSG


  Protein sequence of regulator: 305 a.a.    .

>REG0048 NC_002516:c83318-82404 [Pseudomonas aeruginosa PAO1]
MSQPSENRLITSARYALCLLTASGVLLSGCASSGVGSVAQTTRAEYYPSCYEPVSHLRSTDNAVRNSAITGAITGGLLGG
LAGGLASDENRGRNAALAAAGGALAGGAAGYYMEKQKQISDDRARIGSYGTDVDRSTVEINRSVAYAKSAQSCYQSQFKA
LLDGRKNKSINEAEGRKRLAEIVSGLQETNALLVAANGRAGENISNYTQAYEKDLQQVGVPRAEVTKVAEAENRASTTKG
GSKPKTGSNPKVPKEAVATEQTIRKAQDAQSEGNKVASQGQGMIREVCNSPDMGDWAPPSCAKA*

  Nucleotide sequence of regulator: 915 bp    .

>REG0048 NC_002516:c83318-82404 [Pseudomonas aeruginosa PAO1]
ATGAGCCAACCCAGCGAAAACCGTTTGATCACCTCGGCGCGCTACGCGCTCTGCCTGTTGACCGCCAGCGGCGTGCTGCT
CAGCGGCTGCGCCAGCAGCGGCGTCGGCTCGGTCGCCCAGACCACCCGCGCGGAATACTACCCGTCCTGCTACGAGCCGG
TGTCGCACCTGCGCAGCACCGATAACGCAGTGCGCAATTCGGCCATCACCGGCGCCATTACCGGCGGCCTCCTGGGCGGC
CTGGCCGGCGGCCTGGCCAGCGACGAGAACCGCGGCCGCAATGCCGCCCTCGCTGCCGCAGGCGGCGCCCTGGCCGGCGG
CGCGGCGGGCTACTACATGGAGAAGCAGAAGCAGATCAGCGATGACCGCGCGCGCATCGGCTCCTACGGTACCGACGTCG
ACCGCAGCACCGTCGAGATCAACCGTAGCGTGGCCTACGCCAAGTCGGCGCAAAGCTGCTACCAGAGCCAGTTCAAGGCT
CTGCTCGACGGTCGCAAGAACAAGTCGATCAACGAAGCCGAAGGGCGCAAGCGCCTGGCCGAGATCGTCAGCGGCCTGCA
GGAGACCAACGCCTTGCTGGTCGCCGCCAACGGCCGTGCCGGCGAGAACATCAGCAACTACACCCAGGCCTACGAGAAAG
ACCTGCAGCAGGTCGGCGTACCGCGCGCCGAGGTGACCAAGGTCGCCGAGGCCGAGAACCGCGCCAGCACTACGAAAGGC
GGCAGCAAGCCCAAGACCGGCAGCAATCCCAAGGTGCCGAAGGAAGCGGTCGCCACCGAGCAGACCATCCGCAAGGCCCA
GGACGCGCAAAGCGAAGGCAACAAGGTGGCCTCCCAGGGCCAGGGCATGATCCGGGAAGTCTGCAACAGCCCGGACATGG
GCGACTGGGCGCCGCCGAGCTGCGCCAAGGCCTGA