Detailed information of immunity protein


Summary

Immunity protein ID IMU38226 experimental
Cognate effector EFF76654 experimental
Related T6SS (Type) T6SS00164 experimental (Type i3)
Strain Acidovorax citrulli AAC00-1
Replicon chromosome
Sequence Protein sequence (108 a.a.); Nucleotide sequence (324 bp)
Description Deletion of rhsB significantly impairs the ability of killing Bacillus subtilis while ectopic expression of immunity proteins RimB1 or RimB2 confers protection.
Reference
-
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed

External database links

Locus tag (Gene) AAVE_RS25260 (RimB2)
Coordinates (Strand) 544063..544386 (+)
NCBI ID WP_128098957.1
RefSeq NC_008752
Uniprot ID UPI000DE6E048
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-107 VNEYLISPSVLDLYQSSKSKEWRSRVKAKTTIIYKFLRDHDLSKIELLDDSGEAIEDLVLMRSHLTDAGAKLFEKAIPSWDRARDKDGNLSNLTQLENGLKKILSEQ



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9956 - -



  Protein sequence: 108 a.a.    .

>IMU38226 NC_008752:544063-544386 [Acidovorax citrulli AAC00-1]
VNEYLISPSVLDLYQSSKSKEWRSRVKAKTTIIYKFLRDHDLSKIELLDDSGEAIEDLVLMRSHLTDAGAKLFEKAIPSW
DRARDKDGNLSNLTQLENGLKKILSEQ*

  Nucleotide sequence: 324 bp    .

>IMU38226 NC_008752:544063-544386 [Acidovorax citrulli AAC00-1]
GTGAACGAATACCTGATATCGCCAAGCGTTCTGGATCTTTATCAGTCTTCGAAGAGCAAAGAGTGGCGCTCGCGTGTAAA
GGCTAAGACAACAATTATTTATAAATTCCTGCGGGACCATGATCTCAGTAAAATCGAGTTGCTCGATGATTCGGGTGAGG
CAATTGAAGATCTGGTATTGATGCGGTCGCATCTTACGGATGCTGGGGCGAAGCTCTTTGAAAAGGCGATTCCCTCATGG
GACCGGGCGCGCGACAAAGATGGAAATCTTTCCAATCTGACGCAGTTGGAAAACGGTCTCAAGAAGATATTGTCAGAGCA
GTAA