Detailed information of immunity protein
Summary
| Immunity protein ID | IMU38223  |
| Cognate effector | EFF28267 |
| Related T6SS (Type) | T6SS01034 (Type i1) |
| Strain | Escherichia coli PCN033 |
| Replicon | chromosome |
| Sequence | Protein sequence (115 a.a.); Nucleotide sequence (345 bp) |
| Description | - |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | PPECC33_RS07935 (Rhs2I) |
| Coordinates (Strand) | 1619941..1620285 (+) |
| NCBI ID | WP_001279013.1 |
| RefSeq | NZ_CP006632 |
| Uniprot ID | A0A210AUA0_ECOLX |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-114 | MSDFDIVSSIDWHDGVLLEVKTTFKESHFNMTLFIDIYKNENIREKMIVEFSDVDDLVFAMDSAELIDNHKSGNISNGYIKKLKNKRIYKFFLYFSDGLLSMTFKNLQLIKPLE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9992 | - | - |
Protein sequence: 115 a.a. .
>IMU38223 NZ_CP006632:1619941-1620285 [Escherichia coli PCN033]
MSDFDIVSSIDWHDGVLLEVKTTFKESHFNMTLFIDIYKNENIREKMIVEFSDVDDLVFAMDSAELIDNHKSGNISNGYI
KKLKNKRIYKFFLYFSDGLLSMTFKNLQLIKPLE*
MSDFDIVSSIDWHDGVLLEVKTTFKESHFNMTLFIDIYKNENIREKMIVEFSDVDDLVFAMDSAELIDNHKSGNISNGYI
KKLKNKRIYKFFLYFSDGLLSMTFKNLQLIKPLE*
Nucleotide sequence: 345 bp .
>IMU38223 NZ_CP006632:1619941-1620285 [Escherichia coli PCN033]
ATGAGCGATTTTGACATTGTGAGTTCAATTGACTGGCATGATGGGGTTTTGTTAGAAGTAAAAACGACATTCAAAGAATC
TCATTTTAACATGACGTTATTTATTGACATTTATAAAAATGAGAACATTAGGGAAAAAATGATAGTTGAATTTTCTGATG
TAGATGATTTAGTGTTCGCTATGGATTCTGCTGAGTTAATCGATAATCACAAGTCAGGTAATATAAGTAATGGGTATATA
AAGAAATTAAAAAACAAAAGGATATATAAATTTTTTCTTTATTTTTCTGATGGCTTATTAAGCATGACATTTAAAAATTT
ACAATTAATAAAACCATTAGAGTAA
ATGAGCGATTTTGACATTGTGAGTTCAATTGACTGGCATGATGGGGTTTTGTTAGAAGTAAAAACGACATTCAAAGAATC
TCATTTTAACATGACGTTATTTATTGACATTTATAAAAATGAGAACATTAGGGAAAAAATGATAGTTGAATTTTCTGATG
TAGATGATTTAGTGTTCGCTATGGATTCTGCTGAGTTAATCGATAATCACAAGTCAGGTAATATAAGTAATGGGTATATA
AAGAAATTAAAAAACAAAAGGATATATAAATTTTTTCTTTATTTTTCTGATGGCTTATTAAGCATGACATTTAAAAATTT
ACAATTAATAAAACCATTAGAGTAA