Detailed information of immunity protein


Summary

Immunity protein ID IMU38220 experimental
Cognate effector EFF76647 experimental
Related T6SS (Type) T6SS01213 experimental (Type i3)
Strain Pseudomonas aeruginosa PAK
Replicon chromosome
Sequence Protein sequence (64 a.a.); Nucleotide sequence (192 bp)
Description -
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) Y880_RS10850 (tsi5)
Coordinates (Strand) 2306495..2306686 (-)
NCBI ID WP_003090543.1
RefSeq NZ_CP020659
Uniprot ID V6AEA6_PSEAI, A0A1C7C0M7_PSEAI, A0A1F0I474_9PSED, A0A6N0KK08_9PSED, A0A071L3P8_PSEAI, A0A448BJV5_PSEFL
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-4 MIKH
Transmembrane helix 5-27 YLLMTLVCIPLALLYVCLEWFFG
Outside 28-30 NTW
Transmembrane helix 31-50 VTVGVFFGVLVVLRLGLYLY
Inside 51-63 RRSKGIRDGYLDE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9720 - -


  Protein sequence: 64 a.a.    .

>IMU38220 NZ_CP020659:c2306686-2306495 [Pseudomonas aeruginosa PAK]
MIKHYLLMTLVCIPLALLYVCLEWFFGNTWVTVGVFFGVLVVLRLGLYLYRRSKGIRDGYLDE*

  Nucleotide sequence: 192 bp    .

>IMU38220 NZ_CP020659:c2306686-2306495 [Pseudomonas aeruginosa PAK]
ATGATCAAGCATTACCTGCTGATGACCCTCGTCTGCATACCGCTGGCGTTGCTCTATGTCTGCCTGGAATGGTTCTTCGG
CAACACCTGGGTGACCGTCGGGGTGTTCTTCGGCGTGCTCGTCGTGCTGCGCCTCGGGCTCTACCTCTACCGCCGCTCGA
AGGGCATCAGGGACGGCTACCTGGACGAGTGA