Detailed information of immunity protein
Summary
| Immunity protein ID | IMU38216  |
| Cognate effector | EFF76643 |
| Related T6SS (Type) | T6SS01213 (Type i3) |
| Strain | Pseudomonas aeruginosa PAK |
| Replicon | chromosome |
| Sequence | Protein sequence (227 a.a.); Nucleotide sequence (681 bp) |
| Description | - |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | Y880_RS06365 (tsi1) |
| Coordinates (Strand) | 1319322..1320002 (-) |
| NCBI ID | WP_174243846.1 |
| RefSeq | NZ_CP020659 |
| Uniprot ID | UPI0015770E3C |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-226 | MFRLAAPHPRRFACAPRPLFAAFRLLSSGGASVRARRGLVHPFAALAAQRRTRPMKLLAGSFAALFLSLSAQAADCTFTQLEIVPQFGSPNMFGGEDEHVRVMFSNEDPNDDNPDAFPEPPVYLADRDSGNDCRIEDGGIWSRGGVFLSQDGRRVLMHEFSGSSAELVSYDSATCKVVHREDISGQRWAVDKDGLRLGQKCSGESVDSCAKLVKRSLAPFCQTAKK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.7863 | - | - |
Protein sequence: 227 a.a. .
>IMU38216 NZ_CP020659:c1320002-1319322 [Pseudomonas aeruginosa PAK]
MFRLAAPHPRRFACAPRPLFAAFRLLSSGGASVRARRGLVHPFAALAAQRRTRPMKLLAGSFAALFLSLSAQAADCTFTQ
LEIVPQFGSPNMFGGEDEHVRVMFSNEDPNDDNPDAFPEPPVYLADRDSGNDCRIEDGGIWSRGGVFLSQDGRRVLMHEF
SGSSAELVSYDSATCKVVHREDISGQRWAVDKDGLRLGQKCSGESVDSCAKLVKRSLAPFCQTAKK*
MFRLAAPHPRRFACAPRPLFAAFRLLSSGGASVRARRGLVHPFAALAAQRRTRPMKLLAGSFAALFLSLSAQAADCTFTQ
LEIVPQFGSPNMFGGEDEHVRVMFSNEDPNDDNPDAFPEPPVYLADRDSGNDCRIEDGGIWSRGGVFLSQDGRRVLMHEF
SGSSAELVSYDSATCKVVHREDISGQRWAVDKDGLRLGQKCSGESVDSCAKLVKRSLAPFCQTAKK*
Nucleotide sequence: 681 bp .
>IMU38216 NZ_CP020659:c1320002-1319322 [Pseudomonas aeruginosa PAK]
ATGTTTCGACTCGCCGCGCCCCATCCGCGCCGGTTCGCGTGCGCCCCACGTCCCCTCTTCGCCGCTTTCCGCCTGCTGTC
GTCAGGCGGCGCTTCCGTTCGCGCCCGGCGCGGCCTGGTCCATCCTTTCGCCGCCCTGGCGGCCCAACGGAGAACCCGCC
CCATGAAACTGCTCGCCGGCAGCTTCGCCGCTCTCTTCCTGAGCCTTTCGGCCCAGGCGGCGGACTGTACTTTCACCCAG
CTGGAAATCGTGCCCCAGTTCGGCTCGCCGAACATGTTCGGCGGCGAGGACGAGCACGTCCGCGTGATGTTCAGCAACGA
GGATCCCAACGACGACAACCCCGATGCCTTTCCCGAACCGCCGGTCTACCTGGCCGACCGCGACAGCGGCAACGATTGCC
GCATAGAGGACGGCGGCATCTGGTCGCGCGGCGGCGTGTTCCTGAGCCAGGACGGCCGGCGCGTGCTGATGCATGAATTC
AGCGGCTCCAGCGCCGAGCTGGTGTCCTACGACAGCGCTACCTGCAAGGTGGTGCACCGCGAGGACATCTCCGGCCAGCG
CTGGGCGGTGGACAAGGACGGGCTGCGCCTGGGTCAGAAATGCTCGGGCGAATCCGTCGACAGCTGCGCGAAGCTCGTGA
AGCGTTCGCTCGCGCCGTTCTGCCAGACCGCAAAGAAATGA
ATGTTTCGACTCGCCGCGCCCCATCCGCGCCGGTTCGCGTGCGCCCCACGTCCCCTCTTCGCCGCTTTCCGCCTGCTGTC
GTCAGGCGGCGCTTCCGTTCGCGCCCGGCGCGGCCTGGTCCATCCTTTCGCCGCCCTGGCGGCCCAACGGAGAACCCGCC
CCATGAAACTGCTCGCCGGCAGCTTCGCCGCTCTCTTCCTGAGCCTTTCGGCCCAGGCGGCGGACTGTACTTTCACCCAG
CTGGAAATCGTGCCCCAGTTCGGCTCGCCGAACATGTTCGGCGGCGAGGACGAGCACGTCCGCGTGATGTTCAGCAACGA
GGATCCCAACGACGACAACCCCGATGCCTTTCCCGAACCGCCGGTCTACCTGGCCGACCGCGACAGCGGCAACGATTGCC
GCATAGAGGACGGCGGCATCTGGTCGCGCGGCGGCGTGTTCCTGAGCCAGGACGGCCGGCGCGTGCTGATGCATGAATTC
AGCGGCTCCAGCGCCGAGCTGGTGTCCTACGACAGCGCTACCTGCAAGGTGGTGCACCGCGAGGACATCTCCGGCCAGCG
CTGGGCGGTGGACAAGGACGGGCTGCGCCTGGGTCAGAAATGCTCGGGCGAATCCGTCGACAGCTGCGCGAAGCTCGTGA
AGCGTTCGCTCGCGCCGTTCTGCCAGACCGCAAAGAAATGA