Detailed information of effector
Summary
| Effector ID | EFF76643  |
| Effector type | Tae |
| Cognate immunity protein | IMU38216 |
| Related T6SS (Type) | T6SS01213 (Type i3) |
| Strain | Pseudomonas aeruginosa PAK |
| Replicon | chromosome |
| Sequence | Protein sequence (155 a.a.); Nucleotide sequence (465 bp) |
| Description | - |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | Y880_RS06360 (tse1) |
| Coordinates (Strand) | 1318816..1319280 (-) |
| NCBI ID | WP_016253554.1 |
| RefSeq | NZ_CP020659 |
| Uniprot ID | UPI000340E4A0 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-154 | MDSLDQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVAAELGVPMPRGNANAMVNGLEQSWTKLASGAEAAQKAAQGFLVIAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASCSLPRAS |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9773 | - | - |
Protein sequence: 155 a.a. .
>EFF76643 NZ_CP020659:c1319280-1318816 Type VI Amidase Effector (Tae) [Pseudomonas aeruginosa PAK]
MDSLDQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVAAELGVPMPRGNANAMVNGLEQSWTKLASGAEAAQKAAQGFLV
IAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASCSLPRAS*
MDSLDQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVAAELGVPMPRGNANAMVNGLEQSWTKLASGAEAAQKAAQGFLV
IAGLKGRTYGHVAVVISGPLYRQKYPMCWCGSIAGAVGQSQGLKSVGQVWNRTDRDRLNYYVYSLASCSLPRAS*
Nucleotide sequence: 465 bp .
>EFF76643 NZ_CP020659:c1319280-1318816 Type VI Amidase Effector (Tae) [Pseudomonas aeruginosa PAK]
ATGGACAGTCTCGATCAATGCATCGTCAACGCCTGCAAGAACAGCTGGGACAAGAGCTACCTGGCCGGCACCCCGAACAA
GGACAACTGTTCCGGCTTCGTCCAGTCGGTGGCCGCCGAGCTGGGCGTACCGATGCCCCGCGGCAACGCCAACGCCATGG
TCAACGGCCTGGAGCAGAGCTGGACCAAGCTCGCCTCCGGCGCCGAGGCCGCGCAGAAGGCGGCCCAGGGCTTCCTGGTG
ATCGCCGGCCTGAAGGGCCGCACCTACGGGCACGTCGCGGTGGTCATCAGCGGTCCGCTGTATCGGCAGAAGTACCCGAT
GTGCTGGTGCGGCAGCATCGCCGGCGCGGTCGGCCAGAGCCAGGGCCTGAAGTCGGTCGGCCAGGTGTGGAATCGCACCG
ACCGCGACCGCCTCAACTACTACGTCTACTCCCTGGCCAGTTGCAGCCTGCCCAGGGCCAGTTGA
ATGGACAGTCTCGATCAATGCATCGTCAACGCCTGCAAGAACAGCTGGGACAAGAGCTACCTGGCCGGCACCCCGAACAA
GGACAACTGTTCCGGCTTCGTCCAGTCGGTGGCCGCCGAGCTGGGCGTACCGATGCCCCGCGGCAACGCCAACGCCATGG
TCAACGGCCTGGAGCAGAGCTGGACCAAGCTCGCCTCCGGCGCCGAGGCCGCGCAGAAGGCGGCCCAGGGCTTCCTGGTG
ATCGCCGGCCTGAAGGGCCGCACCTACGGGCACGTCGCGGTGGTCATCAGCGGTCCGCTGTATCGGCAGAAGTACCCGAT
GTGCTGGTGCGGCAGCATCGCCGGCGCGGTCGGCCAGAGCCAGGGCCTGAAGTCGGTCGGCCAGGTGTGGAATCGCACCG
ACCGCGACCGCCTCAACTACTACGTCTACTCCCTGGCCAGTTGCAGCCTGCCCAGGGCCAGTTGA