Detailed information of immunity protein


Summary

Immunity protein ID IMU38207 experimental
Cognate effector EFF76627 experimental
Related T6SS (Type) T6SS00790 experimental (Type i1)
Strain Vibrio cholerae V52
Replicon chromosome
Sequence Protein sequence (243 a.a.); Nucleotide sequence (729 bp)
Description -
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) VCV52_RS01465
Coordinates (Strand) 315306..316034 (-)
NCBI ID WP_000904079.1
RefSeq NZ_KQ410497
Uniprot ID TSIV2_VIBCH, A0A0X1L1F4_VIBCO, A0A0H3AF62_VIBC3, A0A0K9UVD0_VIBCL, A0A7U8WPM3_VIBCL, A0A0H3QAG2_VIBCL, C3LU50_VIBCM, A0A023PS90_VIBCL
KEGG ID vcq:EN18_03875, vcm:VCM66_A0020, vco:VC0395_0112, vch:VCA0021
PDB ID -
Pfam domain hit(s)

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Domain
Pfam ID
E-value
Aligned region
No matching records found
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

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Prediction                
Region    
Sequence
Inside1-38MLIDKNELEQLKVKLHSSEVIYQWDSVAYGERRSEIFR
Transmembrane helix39-61VFGAISAGIVPLWPFIFFADIQF
Outside62-65NSKE
Transmembrane helix66-85FWGFICFSLAGMAAARYLFM
Inside86-116PDHRYCYSLTQAGIYYTDQEVIPDAAYTFVR
Transmembrane helix117-139GFAWVGIAVCLLALAVVGPLAFV
Outside140-242GAGGFALLAFGLTNFHPTVHKKEVYFADQLIVFDPIKEKMVDLNTDSTDEPWFDRRLFFSSLDEKTHFIELVKSIHNNVDYLPLQRVNDQYKHPIFNQELKEE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
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Prediction       
Probability
Cleavage site
Signal peptide sequence
Other0.9583--


  Protein sequence: 243 a.a.    .

>IMU38207 NZ_KQ410497:c316034-315306 [Vibrio cholerae V52]
MLIDKNELEQLKVKLHSSEVIYQWDSVAYGERRSEIFRVFGAISAGIVPLWPFIFFADIQFNSKEFWGFICFSLAGMAAA
RYLFMPDHRYCYSLTQAGIYYTDQEVIPDAAYTFVRGFAWVGIAVCLLALAVVGPLAFVGAGGFALLAFGLTNFHPTVHK
KEVYFADQLIVFDPIKEKMVDLNTDSTDEPWFDRRLFFSSLDEKTHFIELVKSIHNNVDYLPLQRVNDQYKHPIFNQELK
EE*

  Nucleotide sequence: 729 bp    .

>IMU38207 NZ_KQ410497:c316034-315306 [Vibrio cholerae V52]
ATGTTAATTGATAAAAATGAGTTAGAGCAGTTAAAGGTAAAATTACACAGCAGTGAGGTTATTTATCAATGGGATAGTGT
GGCTTACGGAGAGAGAAGATCTGAAATATTTCGCGTTTTTGGGGCAATCTCTGCTGGTATTGTTCCCCTTTGGCCATTTA
TTTTTTTTGCAGATATTCAATTTAATAGTAAAGAGTTTTGGGGATTTATCTGCTTTAGTCTGGCGGGCATGGCTGCTGCC
AGATATCTTTTTATGCCCGACCACCGTTATTGCTACAGTTTAACGCAAGCGGGGATTTATTATACGGATCAAGAAGTGAT
CCCAGATGCGGCCTACACTTTTGTGCGTGGTTTTGCTTGGGTGGGGATTGCGGTCTGTTTGTTAGCCTTAGCCGTCGTTG
GCCCGTTAGCGTTTGTCGGTGCGGGCGGTTTTGCCCTGCTGGCCTTTGGTTTGACCAACTTCCACCCCACCGTACATAAG
AAAGAGGTTTACTTTGCTGACCAATTGATTGTTTTTGATCCCATCAAAGAAAAGATGGTGGATTTAAATACAGATAGCAC
AGATGAACCATGGTTTGACAGACGGCTATTTTTTAGTTCACTTGATGAGAAGACGCATTTTATTGAGCTCGTGAAGAGTA
TTCATAATAATGTCGACTATCTTCCGTTACAGCGAGTTAACGATCAGTACAAGCATCCAATCTTTAATCAAGAATTAAAA
GAGGAATAG