Detailed information of immunity protein


Summary

Immunity protein ID IMU17310 experimental
Cognate effector EFF18630 experimental
Related T6SS (Type) T6SS01028 experimental (Type i1)
Strain Vibrio fluvialis strain 85003
Replicon chromosome
Sequence Protein sequence (699 a.a.); Nucleotide sequence (2097 bp)
Description -
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) tssI2_b
Coordinates (Strand) 3154..5250 (+)
NCBI ID ARK19416.1
GenBank KY319186
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 2e-75 40..334
Phage_base_V PF04717.14 4.9e-14 392..458
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-698 MATLKYQFHVEGLEDDTLVVRGFDGQETLSSERINGQPCHGFRYELELASRLANLTPEMVVDKVAELTLYRDDVLVQRVNGIVRRFTQGDTGHHHTFYSLTLVPALERLSLRHNSRIFQLNTVPEILSVLLQEMGINDYAFALTRDCEQREFCVQYRETDLDFLHRLTAEEGLVYSFIHEEGKHTLIFSDASESLPKLGEPIPYNTLAGGMIESPYISALSVHTQSEVSQTALQDYSFKKPAYSFAQQAVGTEMDYQLPDYEHFDAPGRYKDDVSGKAFSQIRLDYLRRNARTATGKSNQPLLRPGVKFDLQEHLDDTLNRDWLVVSVTSQGTQPQALEEAGGNGATTYANQFSLIPAHRTWRATPQAKPQVDGPMIATVVGPQGEEIFCDEHGRVKLHFPWDRYSNGDEHSSCWVRVSQGWAGSQYGMIAIPRIGHEVIVSFLNGDPDQPIVTGRTYHATNTAPYALPDNKTKTVLRTETHQGQGYNELSFEDQAGSEQIYLHAQKDFDGLIENDHTSVIQHDKHLTVENDRFTQIKNNQHLTVGGESRTKIALDQSIEIGGSLHQKVADKTIFDSGNEVHLKAGNKLVLDAGSELTIKAAGSFIKVDAGGVHVVGSAINLNSGGSAGSGSGYGGQAAELPSGVEAQAVPEEMLCAPMSATMSSLLPAVATLDLPVIELCQKRADGSCPKANCECTQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9964 - -


  Protein sequence: 699 a.a.    .

>IMU17310 KY319186:3154-5250 [Vibrio fluvialis]
MATLKYQFHVEGLEDDTLVVRGFDGQETLSSERINGQPCHGFRYELELASRLANLTPEMVVDKVAELTLYRDDVLVQRVN
GIVRRFTQGDTGHHHTFYSLTLVPALERLSLRHNSRIFQLNTVPEILSVLLQEMGINDYAFALTRDCEQREFCVQYRETD
LDFLHRLTAEEGLVYSFIHEEGKHTLIFSDASESLPKLGEPIPYNTLAGGMIESPYISALSVHTQSEVSQTALQDYSFKK
PAYSFAQQAVGTEMDYQLPDYEHFDAPGRYKDDVSGKAFSQIRLDYLRRNARTATGKSNQPLLRPGVKFDLQEHLDDTLN
RDWLVVSVTSQGTQPQALEEAGGNGATTYANQFSLIPAHRTWRATPQAKPQVDGPMIATVVGPQGEEIFCDEHGRVKLHF
PWDRYSNGDEHSSCWVRVSQGWAGSQYGMIAIPRIGHEVIVSFLNGDPDQPIVTGRTYHATNTAPYALPDNKTKTVLRTE
THQGQGYNELSFEDQAGSEQIYLHAQKDFDGLIENDHTSVIQHDKHLTVENDRFTQIKNNQHLTVGGESRTKIALDQSIE
IGGSLHQKVADKTIFDSGNEVHLKAGNKLVLDAGSELTIKAAGSFIKVDAGGVHVVGSAINLNSGGSAGSGSGYGGQAAE
LPSGVEAQAVPEEMLCAPMSATMSSLLPAVATLDLPVIELCQKRADGSCPKANCECTQ*

  Nucleotide sequence: 2097 bp    .

>IMU17310 KY319186:3154-5250 [Vibrio fluvialis]
ATGGCGACGTTAAAGTATCAGTTTCATGTGGAAGGTCTGGAGGACGACACGCTGGTGGTGCGTGGGTTCGACGGGCAGGA
AACGCTTTCCAGCGAACGCATCAATGGGCAACCGTGCCACGGTTTTCGTTATGAACTGGAGCTCGCCAGTCGGCTTGCCA
ATTTAACGCCCGAGATGGTGGTGGATAAAGTCGCGGAGCTGACGCTCTATCGCGACGATGTGCTGGTTCAACGTGTGAAC
GGCATCGTGCGCCGCTTTACGCAGGGCGATACCGGCCATCACCACACTTTTTACTCGCTGACGCTGGTGCCTGCCTTAGA
GCGTTTGTCTCTGCGCCACAACAGCCGCATCTTCCAACTCAACACCGTGCCGGAAATCCTCTCTGTTCTGCTGCAGGAAA
TGGGCATCAACGATTACGCCTTTGCGCTGACCCGCGACTGCGAACAGCGTGAATTCTGCGTTCAGTACCGTGAAACCGAC
TTGGATTTTCTCCATCGCCTGACGGCCGAAGAAGGGCTGGTGTACAGCTTTATCCATGAAGAGGGCAAACACACGCTGAT
ATTCAGCGACGCCTCAGAGAGCCTACCGAAACTCGGTGAGCCAATTCCGTACAACACGCTGGCGGGCGGCATGATTGAAT
CACCGTATATCTCGGCGCTGAGCGTGCACACCCAATCGGAGGTGAGCCAGACCGCGCTGCAGGATTACAGCTTCAAAAAA
CCGGCGTACTCCTTTGCCCAGCAAGCGGTCGGGACCGAAATGGATTACCAGCTGCCAGATTACGAACATTTCGATGCGCC
GGGGCGCTATAAAGACGATGTCAGCGGTAAAGCGTTCAGCCAGATCCGCCTTGATTATTTGCGCCGCAACGCGCGCACTG
CGACCGGTAAAAGCAACCAACCACTGCTGCGTCCGGGGGTGAAGTTTGACCTGCAAGAGCACCTTGATGACACCCTAAAC
CGAGACTGGTTGGTGGTGAGTGTCACCAGCCAAGGCACGCAGCCTCAGGCGCTGGAAGAAGCCGGAGGTAATGGCGCGAC
CACCTACGCGAACCAATTCTCGCTCATCCCAGCGCATCGCACCTGGCGCGCCACGCCGCAAGCCAAACCTCAGGTTGATG
GCCCGATGATTGCCACTGTCGTTGGCCCGCAAGGCGAAGAGATCTTCTGCGATGAACACGGCCGAGTAAAACTGCATTTT
CCATGGGATCGCTATTCCAACGGTGATGAGCACAGCTCCTGCTGGGTGCGCGTCTCGCAAGGCTGGGCGGGCAGTCAATA
TGGCATGATCGCCATTCCGCGCATCGGTCATGAAGTGATTGTGTCGTTTCTCAATGGTGACCCGGACCAACCAATTGTCA
CCGGTCGTACCTATCACGCCACCAACACTGCGCCGTATGCACTACCGGATAACAAAACCAAAACCGTGCTGCGCACCGAA
ACCCATCAGGGGCAGGGCTATAACGAACTCAGTTTTGAAGACCAAGCGGGCAGTGAGCAAATTTATCTGCACGCACAGAA
AGACTTTGACGGCCTGATTGAAAACGACCACACCAGTGTCATTCAACACGACAAACACCTCACGGTGGAGAACGATCGCT
TCACTCAAATCAAAAACAATCAGCATCTGACGGTGGGCGGCGAAAGCCGTACCAAAATCGCATTAGATCAAAGCATTGAA
ATCGGCGGATCGCTGCATCAGAAAGTGGCCGATAAGACCATTTTTGACTCCGGTAACGAAGTACACCTCAAAGCAGGCAA
CAAGTTGGTCCTCGATGCGGGCAGTGAACTCACCATCAAAGCCGCAGGCAGCTTTATCAAAGTCGATGCTGGCGGCGTGC
ATGTGGTCGGTTCTGCAATCAACCTCAACTCTGGTGGCAGCGCAGGCAGCGGCTCGGGTTATGGTGGGCAAGCGGCTGAA
CTGCCTAGTGGCGTTGAAGCTCAAGCGGTGCCAGAGGAAATGCTATGTGCTCCAATGTCAGCGACGATGTCGAGTCTACT
ACCTGCTGTCGCTACATTGGACTTACCTGTAATAGAGCTTTGTCAAAAAAGAGCAGATGGAAGTTGTCCAAAGGCGAATT
GCGAGTGTACTCAATGA