SecReT6, T6SS database

Detailed information of effector

Summary

Effector ID	EFF18630
Effector type	-
Cognate immunity protein	IMU17310
Related T6SS (Type)	T6SS01028 (Type i1)
Strain	Vibrio fluvialis strain 85003
Replicon	chromosome
Sequence	Protein sequence (173 a.a.); Nucleotide sequence (519 bp)
Description	-
Reference	[1] Huang Y, Du P, Zhao M, et al. Functional Characterization and Conditional Regulation of the Type VI Secretion System in Vibrio fluvialis. Front Microbiol. 2017 Mar 30;8:528. doi: 10.3389/fmicb.2017.00528. eCollection 2017. PMID: 28424671

Experimental investigation has been performed.

Bioinformatics investigation has been performed

External database links

Locus tag (Gene)	tssD2_b
Coordinates (Strand)	2484..3002 (+)
NCBI ID	ARK19415.1
GenBank	KY319186
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_HCP	PF05638.14	8.3e-34	6..155

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-172	MPTPCYISIEGQTQGLITAGACTADSIGDSFVEGHEDEMLVQQFDHIVTVPTDPQSGQPSGQRVHKPFKFTVSLNKAVPLLYNALASGEKMTTVELKWYRTSIEGKQENFFTTKLENASIVDIQCEMPHCQDPAKSDFTQNLTVSMSYRKITWDHVNAGTSGSDDWRKPIEA

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.7816	-	-

Protein sequence: 173 a.a. .

                                    >EFF18630 KY319186:2484-3002  (Unknown) [Vibrio fluvialis]
MPTPCYISIEGQTQGLITAGACTADSIGDSFVEGHEDEMLVQQFDHIVTVPTDPQSGQPSGQRVHKPFKFTVSLNKAVPL
LYNALASGEKMTTVELKWYRTSIEGKQENFFTTKLENASIVDIQCEMPHCQDPAKSDFTQNLTVSMSYRKITWDHVNAGT
SGSDDWRKPIEA*

                                

Nucleotide sequence: 519 bp .

                                    >EFF18630 KY319186:2484-3002  (Unknown) [Vibrio fluvialis]
ATGCCAACTCCATGTTATATCTCTATCGAAGGTCAAACTCAGGGTCTAATCACTGCAGGCGCTTGTACTGCGGATTCTAT
CGGCGATTCATTCGTTGAAGGTCACGAAGACGAGATGCTGGTTCAGCAGTTCGACCACATCGTCACTGTACCAACTGACC
CACAATCGGGCCAGCCTTCAGGTCAACGTGTGCACAAACCATTCAAATTCACCGTGTCTCTGAACAAAGCTGTTCCTCTG
CTGTACAACGCACTGGCTTCAGGCGAGAAGATGACGACGGTTGAACTGAAATGGTACCGCACGTCTATCGAAGGCAAACA
AGAAAACTTCTTCACCACCAAGCTGGAAAACGCGTCTATCGTGGATATCCAATGTGAAATGCCACACTGCCAAGATCCAG
CGAAATCTGATTTCACTCAGAACCTGACGGTCTCTATGTCTTACCGCAAAATCACGTGGGATCACGTGAACGCGGGTACT
TCAGGCTCAGACGATTGGCGTAAACCAATCGAAGCGTAA

                                