Detailed information of effector


Summary

Effector ID EFF18630 experimental
Effector type -
Cognate immunity protein IMU17310 experimental
Related T6SS (Type) T6SS01028 experimental (Type i1)
Strain Vibrio fluvialis strain 85003
Replicon chromosome
Sequence Protein sequence (173 a.a.); Nucleotide sequence (519 bp)
Description -
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed

External database links

Locus tag (Gene) tssD2_b
Coordinates (Strand) 2484..3002 (+)
NCBI ID ARK19415.1
GenBank KY319186
Uniprot ID -
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 8.3e-34 6..155

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-172 MPTPCYISIEGQTQGLITAGACTADSIGDSFVEGHEDEMLVQQFDHIVTVPTDPQSGQPSGQRVHKPFKFTVSLNKAVPLLYNALASGEKMTTVELKWYRTSIEGKQENFFTTKLENASIVDIQCEMPHCQDPAKSDFTQNLTVSMSYRKITWDHVNAGTSGSDDWRKPIEA



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.7816 - -



  Protein sequence: 173 a.a.    .

>EFF18630 KY319186:2484-3002 (Unknown) [Vibrio fluvialis]
MPTPCYISIEGQTQGLITAGACTADSIGDSFVEGHEDEMLVQQFDHIVTVPTDPQSGQPSGQRVHKPFKFTVSLNKAVPL
LYNALASGEKMTTVELKWYRTSIEGKQENFFTTKLENASIVDIQCEMPHCQDPAKSDFTQNLTVSMSYRKITWDHVNAGT
SGSDDWRKPIEA*

  Nucleotide sequence: 519 bp    .

>EFF18630 KY319186:2484-3002 (Unknown) [Vibrio fluvialis]
ATGCCAACTCCATGTTATATCTCTATCGAAGGTCAAACTCAGGGTCTAATCACTGCAGGCGCTTGTACTGCGGATTCTAT
CGGCGATTCATTCGTTGAAGGTCACGAAGACGAGATGCTGGTTCAGCAGTTCGACCACATCGTCACTGTACCAACTGACC
CACAATCGGGCCAGCCTTCAGGTCAACGTGTGCACAAACCATTCAAATTCACCGTGTCTCTGAACAAAGCTGTTCCTCTG
CTGTACAACGCACTGGCTTCAGGCGAGAAGATGACGACGGTTGAACTGAAATGGTACCGCACGTCTATCGAAGGCAAACA
AGAAAACTTCTTCACCACCAAGCTGGAAAACGCGTCTATCGTGGATATCCAATGTGAAATGCCACACTGCCAAGATCCAG
CGAAATCTGATTTCACTCAGAACCTGACGGTCTCTATGTCTTACCGCAAAATCACGTGGGATCACGTGAACGCGGGTACT
TCAGGCTCAGACGATTGGCGTAAACCAATCGAAGCGTAA