Detailed information of immunity protein


Summary

Immunity protein ID IMU17296 experimental
Cognate effector EFF18620 experimental
Related T6SS (Type) T6SS00050 experimental (Type i1)
Strain Photorhabdus laumondii subsp. laumondii TTO1
Replicon chromosome
Sequence Protein sequence (140 a.a.); Nucleotide sequence (420 bp)
Description The Plu0352 protein conferred protection against Tre23, suggesting that Plu0352 acts as an immunity protein against the Tre23 toxin.
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed

External database links

Locus tag (Gene) Plu0352 (Tri23)
Coordinates (Strand) 377114..377533 (-)
NCBI ID WP_011144746.1
RefSeq NC_005126
Uniprot ID A0A6L9JS13_PHOLM, Q7N9H9_PHOLL
KEGG ID plu:plu0354, plum:A4R40_01725
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DcrB PF08786.13 6.3e-40 10..135

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-139 MENTTYQMNEGSLAIPGNWRDESMNVFVLPDDSGINLVVSRTPVPAGMDNPAYYEQTLEQFCTHLPGYQEHQRSEITLSQQPARRLDYQWTSPEGDMYQTVILQIRGPLLLTFNLTSPAPFEAGQRDTLLAIVHSFQAA



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9844 - -



  Protein sequence: 140 a.a.    .

>IMU17296 NC_005126:c377533-377114 [Photorhabdus laumondii subsp. laumondii TTO1]
MENTTYQMNEGSLAIPGNWRDESMNVFVLPDDSGINLVVSRTPVPAGMDNPAYYEQTLEQFCTHLPGYQEHQRSEITLSQ
QPARRLDYQWTSPEGDMYQTVILQIRGPLLLTFNLTSPAPFEAGQRDTLLAIVHSFQAA*

  Nucleotide sequence: 420 bp    .

>IMU17296 NC_005126:c377533-377114 [Photorhabdus laumondii subsp. laumondii TTO1]
ATGGAAAACACAACCTATCAGATGAATGAAGGCTCACTGGCTATCCCGGGCAACTGGCGGGATGAATCCATGAATGTATT
TGTGCTGCCGGACGACAGCGGCATCAATCTGGTGGTCAGCCGCACCCCGGTCCCCGCCGGCATGGATAACCCCGCTTACT
ATGAACAGACCCTGGAGCAGTTCTGCACCCATCTGCCCGGGTACCAGGAGCATCAGCGCAGCGAAATCACCCTCAGCCAG
CAACCCGCCCGCCGTCTGGATTACCAGTGGACAAGCCCGGAAGGCGACATGTACCAGACCGTGATACTGCAAATCCGGGG
CCCGCTGCTGCTGACCTTCAACCTGACCTCCCCCGCGCCTTTTGAAGCCGGCCAGCGTGATACCCTGCTGGCAATTGTCC
ACAGTTTTCAGGCAGCCTGA