Detailed information of immunity protein
Summary
| Immunity protein ID | IMU00338  |
| Cognate effector | EFF01456 |
| Related T6SS (Type) | T6SS00939 (Type i5) |
| Strain | Vibrio alginolyticus 12G01 |
| Replicon | chromosome |
| Sequence | Protein sequence (129 a.a.); Nucleotide sequence (387 bp) |
| Description | - |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | V12G01_03170 |
| Coordinates (Strand) | 493354..493740 (+) |
| NCBI ID | 91191162 |
| GenBank | CH902589 |
| Uniprot ID | UPI0000D52D47 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-6 | MQLIWN |
| Transmembrane helix | 7-29 | IIGYLMFSGVLVIFFQTFFIGIM |
| Outside | 30-50 | HLLMPKDIVNSYFKEPYFNTF |
| Transmembrane helix | 51-73 | ELALFTGWPYAFFRTLMFVRLIV |
| Inside | 74-98 | QPSSGEKRKLPDVSQEVPRWYRLLS |
| Transmembrane helix | 99-121 | FILIWVIIINSTMLALVFFIAGF |
| Outside | 122-128 | LSLANHV |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9981 | - | - |
Protein sequence: 129 a.a. .
>IMU00338 CH902589:493354-493740 [Vibrio alginolyticus 12G01]
MQLIWNIIGYLMFSGVLVIFFQTFFIGIMHLLMPKDIVNSYFKEPYFNTFELALFTGWPYAFFRTLMFVRLIVQPSSGEK
RKLPDVSQEVPRWYRLLSFILIWVIIINSTMLALVFFIAGFLSLANHV*
MQLIWNIIGYLMFSGVLVIFFQTFFIGIMHLLMPKDIVNSYFKEPYFNTFELALFTGWPYAFFRTLMFVRLIVQPSSGEK
RKLPDVSQEVPRWYRLLSFILIWVIIINSTMLALVFFIAGFLSLANHV*
Nucleotide sequence: 387 bp .
>IMU00338 CH902589:493354-493740 [Vibrio alginolyticus 12G01]
ATGCAATTGATCTGGAACATTATTGGATACTTAATGTTCTCTGGTGTATTAGTTATTTTTTTTCAAACATTCTTTATAGG
TATCATGCACCTTTTAATGCCAAAAGACATTGTCAATAGCTACTTTAAAGAACCTTATTTTAACACTTTCGAACTAGCTC
TATTTACAGGTTGGCCTTACGCATTTTTCCGAACATTGATGTTTGTTCGTTTAATCGTTCAACCTAGCTCAGGTGAAAAG
CGAAAGTTACCCGATGTATCCCAAGAGGTGCCTAGGTGGTACCGTCTATTATCCTTCATATTAATATGGGTAATTATCAT
AAACTCTACAATGTTAGCACTTGTATTTTTTATCGCAGGTTTTTTATCACTAGCAAATCATGTATGA
ATGCAATTGATCTGGAACATTATTGGATACTTAATGTTCTCTGGTGTATTAGTTATTTTTTTTCAAACATTCTTTATAGG
TATCATGCACCTTTTAATGCCAAAAGACATTGTCAATAGCTACTTTAAAGAACCTTATTTTAACACTTTCGAACTAGCTC
TATTTACAGGTTGGCCTTACGCATTTTTCCGAACATTGATGTTTGTTCGTTTAATCGTTCAACCTAGCTCAGGTGAAAAG
CGAAAGTTACCCGATGTATCCCAAGAGGTGCCTAGGTGGTACCGTCTATTATCCTTCATATTAATATGGGTAATTATCAT
AAACTCTACAATGTTAGCACTTGTATTTTTTATCGCAGGTTTTTTATCACTAGCAAATCATGTATGA