Detailed information of immunity protein
Summary
| Immunity protein ID | IMU00336  |
| Cognate effector | EFF01454 |
| Related T6SS (Type) | T6SS00939 (Type i5) |
| Strain | Vibrio alginolyticus 12G01 |
| Replicon | chromosome |
| Sequence | Protein sequence (192 a.a.); Nucleotide sequence (576 bp) |
| Description | - |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | V12G01_RS33950 |
| Coordinates (Strand) | 213838..214413 (+) |
| NCBI ID | 91190683 |
| RefSeq | NZ_CH902590 |
| Uniprot ID | UPI0000D5456F |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-191 | MSIYQIRNLNRYFKVLEHDPFQRAMAAGDGALLDRLFNEPVRALGLADVWVEESVKFTAHYKTSVKIPDISVWGSWLVLTPRAVEVLRPYIETDGEFLPIVIDGEKFQVFNVMSFGEEDKEHTKHEYIDGHPAGLEMLKFVESSVTDKYVFKSLMQGCNLLYCDDKLKNLCNEHDLRGVEFDLDLLDVFDY |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9897 | - | - |
Protein sequence: 192 a.a. .
>IMU00336 NZ_CH902590:213838-214413 [Vibrio alginolyticus 12G01]
MSIYQIRNLNRYFKVLEHDPFQRAMAAGDGALLDRLFNEPVRALGLADVWVEESVKFTAHYKTSVKIPDISVWGSWLVLT
PRAVEVLRPYIETDGEFLPIVIDGEKFQVFNVMSFGEEDKEHTKHEYIDGHPAGLEMLKFVESSVTDKYVFKSLMQGCNL
LYCDDKLKNLCNEHDLRGVEFDLDLLDVFDY*
MSIYQIRNLNRYFKVLEHDPFQRAMAAGDGALLDRLFNEPVRALGLADVWVEESVKFTAHYKTSVKIPDISVWGSWLVLT
PRAVEVLRPYIETDGEFLPIVIDGEKFQVFNVMSFGEEDKEHTKHEYIDGHPAGLEMLKFVESSVTDKYVFKSLMQGCNL
LYCDDKLKNLCNEHDLRGVEFDLDLLDVFDY*
Nucleotide sequence: 576 bp .
>IMU00336 NZ_CH902590:213838-214413 [Vibrio alginolyticus 12G01]
ATGAGTATATACCAAATAAGAAATCTCAATCGTTACTTTAAAGTCCTTGAGCATGACCCGTTCCAAAGGGCTATGGCTGC
GGGCGATGGAGCTCTGTTGGATAGGCTTTTTAATGAGCCAGTAAGAGCACTAGGGCTGGCCGACGTTTGGGTAGAAGAGA
GTGTTAAATTTACCGCTCACTACAAAACGTCTGTAAAGATTCCAGACATATCCGTTTGGGGATCATGGTTGGTACTAACG
CCTCGAGCGGTTGAAGTGTTGAGACCATACATTGAAACAGATGGTGAATTTTTACCTATCGTGATAGACGGTGAGAAGTT
TCAGGTTTTCAATGTCATGAGCTTTGGCGAAGAAGACAAGGAACACACTAAACACGAATACATTGATGGCCATCCGGCAG
GATTGGAAATGCTCAAGTTCGTCGAGTCTAGTGTTACAGATAAGTACGTTTTTAAGTCGTTGATGCAAGGGTGTAACTTG
CTGTATTGCGATGACAAGCTAAAGAACTTGTGTAATGAACATGACTTGCGTGGTGTTGAATTCGATTTAGATCTACTGGA
TGTATTTGACTATTAA
ATGAGTATATACCAAATAAGAAATCTCAATCGTTACTTTAAAGTCCTTGAGCATGACCCGTTCCAAAGGGCTATGGCTGC
GGGCGATGGAGCTCTGTTGGATAGGCTTTTTAATGAGCCAGTAAGAGCACTAGGGCTGGCCGACGTTTGGGTAGAAGAGA
GTGTTAAATTTACCGCTCACTACAAAACGTCTGTAAAGATTCCAGACATATCCGTTTGGGGATCATGGTTGGTACTAACG
CCTCGAGCGGTTGAAGTGTTGAGACCATACATTGAAACAGATGGTGAATTTTTACCTATCGTGATAGACGGTGAGAAGTT
TCAGGTTTTCAATGTCATGAGCTTTGGCGAAGAAGACAAGGAACACACTAAACACGAATACATTGATGGCCATCCGGCAG
GATTGGAAATGCTCAAGTTCGTCGAGTCTAGTGTTACAGATAAGTACGTTTTTAAGTCGTTGATGCAAGGGTGTAACTTG
CTGTATTGCGATGACAAGCTAAAGAACTTGTGTAATGAACATGACTTGCGTGGTGTTGAATTCGATTTAGATCTACTGGA
TGTATTTGACTATTAA