Detailed information of immunity protein


Summary

Immunity protein ID IMU00324 experimental
Cognate effector EFF01522 experimental
Related T6SS (Type) T6SS00944 experimental (Type Unknown)
Strain Escherichia coli strain PE086
Replicon chromosome
Sequence Protein sequence (97 a.a.); Nucleotide sequence (291 bp)
Description -
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) het6
Coordinates (Strand) 3252..3542 (+)
NCBI ID 1062685128
GenBank KX118289
Uniprot ID A0A1C9CJJ5_ECOLX
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Colicin_Pyocin PF01320.20 2.9e-25 4..93
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-96 MYNFKDKIEDYTEREFIELLGEFTNPTGDNAQLKGEVLDKYWDDLEEHLTRITQHPLMSDLIYYPAKKGDDEPENILKIVKEWRRSQGLPSIKDSE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9883 - -


  Protein sequence: 97 a.a.    .

>IMU00324 KX118289:3252-3542 [Escherichia coli]
MYNFKDKIEDYTEREFIELLGEFTNPTGDNAQLKGEVLDKYWDDLEEHLTRITQHPLMSDLIYYPAKKGDDEPENILKIV
KEWRRSQGLPSIKDSE*

  Nucleotide sequence: 291 bp    .

>IMU00324 KX118289:3252-3542 [Escherichia coli]
ATGTATAATTTTAAAGATAAAATAGAAGATTACACAGAGCGGGAATTCATTGAGTTGCTTGGCGAGTTTACAAATCCAAC
CGGGGATAACGCTCAATTAAAAGGGGAAGTGCTTGACAAATATTGGGATGATCTAGAAGAACATCTTACCAGAATTACAC
AACATCCGTTGATGAGCGATCTTATCTACTATCCTGCAAAGAAGGGAGATGATGAACCTGAAAACATCCTGAAAATCGTC
AAAGAATGGCGGCGTTCGCAAGGATTGCCTTCGATCAAAGATTCAGAATGA