Detailed information of immunity protein


Summary

Immunity protein ID IMU00321 experimental
Cognate effector EFF01518 experimental
Related T6SS (Type) T6SS00941 experimental (Type Unknown)
Strain Escherichia coli strain STEC004
Replicon chromosome
Sequence Protein sequence (84 a.a.); Nucleotide sequence (252 bp)
Description -
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) AOM81336 (CTI1)
Coordinates (Strand) 7270..7521 (+)
NCBI ID 1062685108
GenBank KX118288
Uniprot ID A0A1C9CJD5_ECOLX
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-83 MIKHNKITIEMALDLARRELELREIPYIKNSLHANYSYKSISIGSKQGWLISAKLKVPETFEPDMIFIEISDPEGFINIPDVL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9927 - -


  Protein sequence: 84 a.a.    .

>IMU00321 KX118288:7270-7521 [Escherichia coli]
MIKHNKITIEMALDLARRELELREIPYIKNSLHANYSYKSISIGSKQGWLISAKLKVPETFEPDMIFIEISDPEGFINIP
DVL*

  Nucleotide sequence: 252 bp    .

>IMU00321 KX118288:7270-7521 [Escherichia coli]
TTGATAAAACATAACAAAATAACTATCGAAATGGCTCTTGACTTGGCTCGGCGTGAGTTAGAGTTAAGGGAAATTCCTTA
TATTAAAAATAGTCTACATGCCAATTACAGCTATAAATCTATTAGTATTGGTTCTAAGCAAGGTTGGTTAATTTCAGCGA
AATTAAAAGTCCCTGAAACTTTTGAGCCTGATATGATATTTATTGAGATATCTGACCCAGAAGGTTTTATTAATATTCCT
GATGTATTATAA