Detailed information of immunity protein
Summary
| Immunity protein ID | IMU00319  |
| Cognate effector | EFF01500 |
| Related T6SS (Type) | T6SS00929 (Type i3) |
| Strain | Serratia marcescens subsp. marcescens Db11 |
| Replicon | chromosome |
| Sequence | Protein sequence (163 a.a.); Nucleotide sequence (489 bp) |
| Description | Rhs1 is neutralized by RhsI1 |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | SMDB11_2278A (RhsI1) |
| Coordinates (Strand) | 2407591..2408079 (+) |
| NCBI ID | 560174122 |
| GenBank | HG326223 |
| Uniprot ID | UPI0003C93A59 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-162 | MQLDTYDGTLELAGITLGTATTREMLIKGSRLWEGWPEKSDGRTTSYRTIISTKKEKAGDIYIIADFSGAFITDAVLCSWRFAPEKLMMGIQKKVEGAITKNLRTWFYEKTHIQLPVSGSWGHIDAAYDPHNLTGTIVCNYRSAFHTEDEWRKYCKRNNIIY |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9726 | - | - |
Protein sequence: 163 a.a. .
>IMU00319 HG326223:2407591-2408079 [Serratia marcescens subsp. marcescens Db11]
MQLDTYDGTLELAGITLGTATTREMLIKGSRLWEGWPEKSDGRTTSYRTIISTKKEKAGDIYIIADFSGAFITDAVLCSW
RFAPEKLMMGIQKKVEGAITKNLRTWFYEKTHIQLPVSGSWGHIDAAYDPHNLTGTIVCNYRSAFHTEDEWRKYCKRNNI
IY*
MQLDTYDGTLELAGITLGTATTREMLIKGSRLWEGWPEKSDGRTTSYRTIISTKKEKAGDIYIIADFSGAFITDAVLCSW
RFAPEKLMMGIQKKVEGAITKNLRTWFYEKTHIQLPVSGSWGHIDAAYDPHNLTGTIVCNYRSAFHTEDEWRKYCKRNNI
IY*
Nucleotide sequence: 489 bp .
>IMU00319 HG326223:2407591-2408079 [Serratia marcescens subsp. marcescens Db11]
ATGCAACTAGATACTTATGACGGAACACTAGAACTCGCGGGAATAACGCTAGGTACAGCGACAACCCGAGAAATGCTAAT
AAAAGGCTCCAGATTGTGGGAGGGTTGGCCAGAAAAGTCAGATGGTAGGACTACATCATACAGAACAATAATCAGTACAA
AAAAAGAAAAAGCCGGCGATATATATATAATTGCCGACTTCTCCGGGGCCTTCATTACAGATGCAGTGCTTTGCAGTTGG
CGTTTTGCGCCTGAAAAACTCATGATGGGAATACAAAAAAAAGTAGAAGGTGCTATTACCAAAAATCTTCGAACATGGTT
TTATGAAAAAACTCATATACAACTTCCAGTTAGTGGTTCATGGGGGCATATTGACGCTGCTTATGACCCACATAATTTAA
CGGGAACAATAGTGTGCAACTATCGCAGTGCATTTCATACTGAGGATGAATGGCGAAAATATTGCAAAAGGAATAACATA
ATTTATTAA
ATGCAACTAGATACTTATGACGGAACACTAGAACTCGCGGGAATAACGCTAGGTACAGCGACAACCCGAGAAATGCTAAT
AAAAGGCTCCAGATTGTGGGAGGGTTGGCCAGAAAAGTCAGATGGTAGGACTACATCATACAGAACAATAATCAGTACAA
AAAAAGAAAAAGCCGGCGATATATATATAATTGCCGACTTCTCCGGGGCCTTCATTACAGATGCAGTGCTTTGCAGTTGG
CGTTTTGCGCCTGAAAAACTCATGATGGGAATACAAAAAAAAGTAGAAGGTGCTATTACCAAAAATCTTCGAACATGGTT
TTATGAAAAAACTCATATACAACTTCCAGTTAGTGGTTCATGGGGGCATATTGACGCTGCTTATGACCCACATAATTTAA
CGGGAACAATAGTGTGCAACTATCGCAGTGCATTTCATACTGAGGATGAATGGCGAAAATATTGCAAAAGGAATAACATA
ATTTATTAA