Detailed information of immunity protein


Summary

Immunity protein ID IMU00319 experimental
Cognate effector EFF01500 experimental
Related T6SS (Type) T6SS00929 experimental (Type i3)
Strain Serratia marcescens subsp. marcescens Db11
Replicon chromosome
Sequence Protein sequence (163 a.a.); Nucleotide sequence (489 bp)
Description Rhs1 is neutralized by RhsI1
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed

External database links

Locus tag (Gene) SMDB11_2278A (RhsI1)
Coordinates (Strand) 2407591..2408079 (+)
NCBI ID 560174122
GenBank HG326223
Uniprot ID UPI0003C93A59
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-162 MQLDTYDGTLELAGITLGTATTREMLIKGSRLWEGWPEKSDGRTTSYRTIISTKKEKAGDIYIIADFSGAFITDAVLCSWRFAPEKLMMGIQKKVEGAITKNLRTWFYEKTHIQLPVSGSWGHIDAAYDPHNLTGTIVCNYRSAFHTEDEWRKYCKRNNIIY



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9726 - -



  Protein sequence: 163 a.a.    .

>IMU00319 HG326223:2407591-2408079 [Serratia marcescens subsp. marcescens Db11]
MQLDTYDGTLELAGITLGTATTREMLIKGSRLWEGWPEKSDGRTTSYRTIISTKKEKAGDIYIIADFSGAFITDAVLCSW
RFAPEKLMMGIQKKVEGAITKNLRTWFYEKTHIQLPVSGSWGHIDAAYDPHNLTGTIVCNYRSAFHTEDEWRKYCKRNNI
IY*

  Nucleotide sequence: 489 bp    .

>IMU00319 HG326223:2407591-2408079 [Serratia marcescens subsp. marcescens Db11]
ATGCAACTAGATACTTATGACGGAACACTAGAACTCGCGGGAATAACGCTAGGTACAGCGACAACCCGAGAAATGCTAAT
AAAAGGCTCCAGATTGTGGGAGGGTTGGCCAGAAAAGTCAGATGGTAGGACTACATCATACAGAACAATAATCAGTACAA
AAAAAGAAAAAGCCGGCGATATATATATAATTGCCGACTTCTCCGGGGCCTTCATTACAGATGCAGTGCTTTGCAGTTGG
CGTTTTGCGCCTGAAAAACTCATGATGGGAATACAAAAAAAAGTAGAAGGTGCTATTACCAAAAATCTTCGAACATGGTT
TTATGAAAAAACTCATATACAACTTCCAGTTAGTGGTTCATGGGGGCATATTGACGCTGCTTATGACCCACATAATTTAA
CGGGAACAATAGTGTGCAACTATCGCAGTGCATTTCATACTGAGGATGAATGGCGAAAATATTGCAAAAGGAATAACATA
ATTTATTAA