Detailed information of immunity protein


Summary

Immunity protein ID IMU00312 experimental
Cognate effector EFF01497 experimental
Related T6SS (Type) T6SS00926 experimental (Type iii)
Strain Bacteroides fragilis 638R
Replicon chromosome
Sequence Protein sequence (343 a.a.); Nucleotide sequence (1029 bp)
Description Bfi2
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) Bf638R_1978 (Bfi2)
Coordinates (Strand) 2335034..2336062 (-)
NCBI ID 499516015
RefSeq NC_016776
Uniprot ID Q64UZ0_BACFR
KEGG ID bfr:BF1941
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-38 MARIMEQKKKSNKQQRREIIAAVKRREAERRREMWHVR
Transmembrane helix 39-61 ICWISIFVVGLIPGSVPALIAIL
Outside 62-73 NLDNDKVTFTNI
Transmembrane helix 74-96 SLGLITITGSACLAGIIMLHIIW
Inside 97-141 KLFPNISLKNDGSLKDVPLPEYLIPPAGEHSFKRIDDKQIVIVND
Transmembrane helix 142-164 GIPVRIMGFFIFFILFIVLVTYV
Outside 165-178 GITPQNVVSEGYSK
Transmembrane helix 179-201 ALILLQLDVAMLLGVIGICLKPW
Inside 202-342 RRVVFDRTTKTITIPARFRFQRKETIPYEQAVVTMSFNSEAKTFSGKGEEQLVIANPSRFLGGITLNMYGGMDAALRFARFIQVYMEEEELPDMPEFEKYRQKDFERRKAEGIPPPLYPSSIPTPKATLERRKEREKYRKD


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9626 - -


  Protein sequence: 343 a.a.    .

>IMU00312 NC_016776:c2336062-2335034 [Bacteroides fragilis 638R]
MARIMEQKKKSNKQQRREIIAAVKRREAERRREMWHVRICWISIFVVGLIPGSVPALIAILNLDNDKVTFTNISLGLITI
TGSACLAGIIMLHIIWKLFPNISLKNDGSLKDVPLPEYLIPPAGEHSFKRIDDKQIVIVNDGIPVRIMGFFIFFILFIVL
VTYVGITPQNVVSEGYSKALILLQLDVAMLLGVIGICLKPWRRVVFDRTTKTITIPARFRFQRKETIPYEQAVVTMSFNS
EAKTFSGKGEEQLVIANPSRFLGGITLNMYGGMDAALRFARFIQVYMEEEELPDMPEFEKYRQKDFERRKAEGIPPPLYP
SSIPTPKATLERRKEREKYRKD*

  Nucleotide sequence: 1029 bp    .

>IMU00312 NC_016776:c2336062-2335034 [Bacteroides fragilis 638R]
ATGGCAAGAATAATGGAACAGAAGAAGAAAAGTAATAAACAGCAGCGTCGTGAAATAATAGCCGCTGTTAAGCGTAGAGA
AGCCGAAAGGAGAAGAGAAATGTGGCATGTAAGGATATGTTGGATATCAATATTTGTAGTGGGTTTGATTCCAGGTTCGG
TTCCGGCTTTAATTGCAATATTAAATTTGGACAATGACAAAGTAACCTTTACAAATATTTCACTAGGCTTAATTACGATT
ACGGGTAGCGCTTGTCTGGCTGGAATAATTATGTTACATATTATTTGGAAATTATTTCCCAATATATCACTGAAGAATGA
CGGCAGTTTAAAAGACGTACCATTGCCGGAATATTTAATACCTCCTGCTGGAGAACATTCATTTAAGCGGATTGATGATA
AACAGATTGTTATCGTTAATGATGGTATTCCAGTTAGAATTATGGGATTCTTTATTTTTTTTATCTTGTTCATTGTTTTA
GTTACATATGTAGGTATTACTCCTCAGAATGTTGTCTCCGAAGGCTATTCAAAAGCCTTAATTCTTCTTCAACTGGATGT
TGCTATGTTGTTAGGTGTAATAGGAATTTGCCTTAAACCTTGGCGTCGAGTAGTTTTTGACCGTACTACTAAAACGATAA
CTATTCCTGCCCGATTTCGCTTTCAGAGGAAAGAGACTATTCCTTATGAACAAGCAGTGGTTACCATGTCTTTTAATTCA
GAAGCGAAGACATTCAGTGGGAAAGGTGAAGAACAACTTGTAATAGCCAATCCGTCCCGTTTTTTGGGTGGAATCACTTT
AAATATGTATGGTGGTATGGATGCCGCATTACGCTTTGCCCGCTTCATACAAGTATATATGGAGGAAGAGGAGTTGCCGG
ACATGCCGGAATTTGAGAAATACAGGCAAAAAGACTTTGAACGAAGAAAAGCGGAAGGGATTCCTCCGCCACTTTATCCG
AGCAGTATTCCAACACCGAAGGCAACACTGGAACGACGGAAAGAAAGAGAAAAATATAGGAAAGATTGA