Detailed information of immunity protein


Summary

Immunity protein ID IMU00311 experimental
Cognate effector EFF01451 experimental
Related T6SS (Type) T6SS00926 experimental (Type iii)
Strain Bacteroides fragilis 638R
Replicon chromosome
Sequence Protein sequence (143 a.a.); Nucleotide sequence (429 bp)
Description Bfi1
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed

External database links

Locus tag (Gene) Bf638R_1987 (Bfi1)
Coordinates (Strand) 2345381..2345809 (-)
NCBI ID 496043967
RefSeq NC_016776
Uniprot ID Q64UY1_BACFR
KEGG ID bfr:BF1950
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-34 VVGRCKISIMILYDYLFYCSYKMGMRSHNFDGLP
Transmembrane helix 35-57 VLAGMMMVTPNMMLHLAILQVVL
Outside 58-71 QTLEIHWFEELLAL
Transmembrane helix 72-94 GWWGHIIYLGFFVGVYCYYWYNG
Inside 95-113 RYKRIIEKYNLEKNTYWKR
Transmembrane helix 114-136 HPFVTILLYVITNFVVFFIVVCI
Outside 137-142 KKGYIF



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9172 - -



  Protein sequence: 143 a.a.    .

>IMU00311 NC_016776:c2345809-2345381 [Bacteroides fragilis 638R]
VVGRCKISIMILYDYLFYCSYKMGMRSHNFDGLPVLAGMMMVTPNMMLHLAILQVVLQTLEIHWFEELLALGWWGHIIYL
GFFVGVYCYYWYNGRYKRIIEKYNLEKNTYWKRHPFVTILLYVITNFVVFFIVVCIKKGYIF*

  Nucleotide sequence: 429 bp    .

>IMU00311 NC_016776:c2345809-2345381 [Bacteroides fragilis 638R]
GTGGTGGGACGGTGTAAGATTAGCATTATGATTCTGTATGATTATTTATTTTACTGTTCCTACAAAATGGGTATGAGGTC
ACATAACTTTGACGGATTACCTGTGTTAGCAGGCATGATGATGGTAACTCCTAATATGATGTTACATTTAGCTATATTGC
AAGTTGTATTACAGACATTAGAAATTCATTGGTTTGAAGAATTGTTAGCTCTAGGTTGGTGGGGACATATTATCTATTTA
GGATTTTTTGTCGGTGTCTATTGCTATTATTGGTATAATGGTAGATATAAAAGAATAATTGAGAAATATAATTTAGAAAA
AAATACTTATTGGAAAAGGCATCCATTTGTGACAATCTTATTGTACGTAATCACAAATTTTGTGGTGTTTTTCATAGTTG
TATGTATTAAAAAGGGATATATATTTTGA