Detailed information of immunity protein
Summary
| Immunity protein ID | IMU00311  |
| Cognate effector | EFF01451 |
| Related T6SS (Type) | T6SS00926 (Type iii) |
| Strain | Bacteroides fragilis 638R |
| Replicon | chromosome |
| Sequence | Protein sequence (143 a.a.); Nucleotide sequence (429 bp) |
| Description | Bfi1 |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | Bf638R_1987 (Bfi1) |
| Coordinates (Strand) | 2345381..2345809 (-) |
| NCBI ID | 496043967 |
| RefSeq | NC_016776 |
| Uniprot ID | Q64UY1_BACFR |
| KEGG ID | bfr:BF1950 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-34 | VVGRCKISIMILYDYLFYCSYKMGMRSHNFDGLP |
| Transmembrane helix | 35-57 | VLAGMMMVTPNMMLHLAILQVVL |
| Outside | 58-71 | QTLEIHWFEELLAL |
| Transmembrane helix | 72-94 | GWWGHIIYLGFFVGVYCYYWYNG |
| Inside | 95-113 | RYKRIIEKYNLEKNTYWKR |
| Transmembrane helix | 114-136 | HPFVTILLYVITNFVVFFIVVCI |
| Outside | 137-142 | KKGYIF |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9172 | - | - |
Protein sequence: 143 a.a. .
>IMU00311 NC_016776:c2345809-2345381 [Bacteroides fragilis 638R]
VVGRCKISIMILYDYLFYCSYKMGMRSHNFDGLPVLAGMMMVTPNMMLHLAILQVVLQTLEIHWFEELLALGWWGHIIYL
GFFVGVYCYYWYNGRYKRIIEKYNLEKNTYWKRHPFVTILLYVITNFVVFFIVVCIKKGYIF*
VVGRCKISIMILYDYLFYCSYKMGMRSHNFDGLPVLAGMMMVTPNMMLHLAILQVVLQTLEIHWFEELLALGWWGHIIYL
GFFVGVYCYYWYNGRYKRIIEKYNLEKNTYWKRHPFVTILLYVITNFVVFFIVVCIKKGYIF*
Nucleotide sequence: 429 bp .
>IMU00311 NC_016776:c2345809-2345381 [Bacteroides fragilis 638R]
GTGGTGGGACGGTGTAAGATTAGCATTATGATTCTGTATGATTATTTATTTTACTGTTCCTACAAAATGGGTATGAGGTC
ACATAACTTTGACGGATTACCTGTGTTAGCAGGCATGATGATGGTAACTCCTAATATGATGTTACATTTAGCTATATTGC
AAGTTGTATTACAGACATTAGAAATTCATTGGTTTGAAGAATTGTTAGCTCTAGGTTGGTGGGGACATATTATCTATTTA
GGATTTTTTGTCGGTGTCTATTGCTATTATTGGTATAATGGTAGATATAAAAGAATAATTGAGAAATATAATTTAGAAAA
AAATACTTATTGGAAAAGGCATCCATTTGTGACAATCTTATTGTACGTAATCACAAATTTTGTGGTGTTTTTCATAGTTG
TATGTATTAAAAAGGGATATATATTTTGA
GTGGTGGGACGGTGTAAGATTAGCATTATGATTCTGTATGATTATTTATTTTACTGTTCCTACAAAATGGGTATGAGGTC
ACATAACTTTGACGGATTACCTGTGTTAGCAGGCATGATGATGGTAACTCCTAATATGATGTTACATTTAGCTATATTGC
AAGTTGTATTACAGACATTAGAAATTCATTGGTTTGAAGAATTGTTAGCTCTAGGTTGGTGGGGACATATTATCTATTTA
GGATTTTTTGTCGGTGTCTATTGCTATTATTGGTATAATGGTAGATATAAAAGAATAATTGAGAAATATAATTTAGAAAA
AAATACTTATTGGAAAAGGCATCCATTTGTGACAATCTTATTGTACGTAATCACAAATTTTGTGGTGTTTTTCATAGTTG
TATGTATTAAAAAGGGATATATATTTTGA