Detailed information of immunity protein


Summary

Immunity protein ID IMU00303 experimental
Cognate effector EFF01370 experimental
Related T6SS (Type) T6SS00535 experimental (Type i3)
Strain Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Replicon chromosome
Sequence Protein sequence (128 a.a.); Nucleotide sequence (384 bp)
Description -
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) STM0278 (Tai4)
Coordinates (Strand) 318129..318512 (+)
NCBI ID 378698250
RefSeq NC_016810
Uniprot ID UPI00000CCE72
KEGG ID -
PDB ID -
Pfam domain hit(s)

Loading, please wait
Domain
Pfam ID
E-value
Aligned region
Tai4PF16695.75.2e-2339..121
Showing 1 to 1 of 1 rows
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Loading, please wait
Prediction                
Region    
Sequence
Inside1-6VDTAVK
Transmembrane helix7-26WLILVTFSISGMLVWQPSFA
Outside27-127QEALTTQYSQSELLKNWALSHCLALVYKDDVVKNDARATASAYLEYGKQSVEIYHEIDEIAKKYSGLKYNGSISSDFNTMKCIDFIHDRELNELIKRRVEK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Loading, please wait
Prediction       
Probability
Cleavage site
Signal peptide sequence
SP(Sec/SPI)0.9545pos: 26-27. SFA-QE.VDTAVKWLILVTFSISGMLVWQPSFA


  Protein sequence: 128 a.a.    .

>IMU00303 NC_016810:318129-318512 [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344]
VDTAVKWLILVTFSISGMLVWQPSFAQEALTTQYSQSELLKNWALSHCLALVYKDDVVKNDARATASAYLEYGKQSVEIY
HEIDEIAKKYSGLKYNGSISSDFNTMKCIDFIHDRELNELIKRRVEK*

  Nucleotide sequence: 384 bp    .

>IMU00303 NC_016810:318129-318512 [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344]
GTGGATACTGCCGTGAAATGGTTAATATTAGTTACTTTCAGCATAAGTGGAATGCTGGTATGGCAGCCATCCTTTGCACA
AGAAGCATTGACCACACAATATTCACAGTCGGAACTCTTAAAAAATTGGGCGCTGAGTCATTGTCTGGCATTAGTATACA
AAGATGATGTCGTTAAAAACGATGCCAGAGCTACGGCCAGTGCTTACCTTGAATATGGTAAACAATCTGTGGAGATTTAC
CATGAAATTGATGAGATTGCGAAAAAATATTCAGGGTTGAAATATAACGGTTCGATATCATCAGATTTTAATACCATGAA
GTGCATAGATTTTATCCATGACAGGGAATTAAATGAATTAATTAAAAGGCGTGTCGAGAAGTAA