Detailed information of immunity protein


Summary

Immunity protein ID IMU00303 experimental
Cognate effector EFF01370 experimental
Related T6SS (Type) T6SS00535 experimental (Type i3)
Strain Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Replicon chromosome
Sequence Protein sequence (128 a.a.); Nucleotide sequence (384 bp)
Description -
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed

External database links

Locus tag (Gene) STM0278 (Tai4)
Coordinates (Strand) 318129..318512 (+)
NCBI ID 378698250
RefSeq NC_016810
Uniprot ID UPI00000CCE72
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Tai4 PF16695.7 5.2e-23 39..121

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-6 VDTAVK
Transmembrane helix 7-26 WLILVTFSISGMLVWQPSFA
Outside 27-127 QEALTTQYSQSELLKNWALSHCLALVYKDDVVKNDARATASAYLEYGKQSVEIYHEIDEIAKKYSGLKYNGSISSDFNTMKCIDFIHDRELNELIKRRVEK



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
SP(Sec/SPI) 0.9545 pos: 26-27. SFA-QE. VDTAVKWLILVTFSISGMLVWQPSFA



  Protein sequence: 128 a.a.    .

>IMU00303 NC_016810:318129-318512 [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344]
VDTAVKWLILVTFSISGMLVWQPSFAQEALTTQYSQSELLKNWALSHCLALVYKDDVVKNDARATASAYLEYGKQSVEIY
HEIDEIAKKYSGLKYNGSISSDFNTMKCIDFIHDRELNELIKRRVEK*

  Nucleotide sequence: 384 bp    .

>IMU00303 NC_016810:318129-318512 [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344]
GTGGATACTGCCGTGAAATGGTTAATATTAGTTACTTTCAGCATAAGTGGAATGCTGGTATGGCAGCCATCCTTTGCACA
AGAAGCATTGACCACACAATATTCACAGTCGGAACTCTTAAAAAATTGGGCGCTGAGTCATTGTCTGGCATTAGTATACA
AAGATGATGTCGTTAAAAACGATGCCAGAGCTACGGCCAGTGCTTACCTTGAATATGGTAAACAATCTGTGGAGATTTAC
CATGAAATTGATGAGATTGCGAAAAAATATTCAGGGTTGAAATATAACGGTTCGATATCATCAGATTTTAATACCATGAA
GTGCATAGATTTTATCCATGACAGGGAATTAAATGAATTAATTAAAAGGCGTGTCGAGAAGTAA