Detailed information of immunity protein


Summary

Immunity protein ID IMU00273 experimental
Cognate effector EFF01035 experimental
Related T6SS (Type) T6SS00003 experimental (Type i3)
Strain Pseudomonas aeruginosa PAO1
Replicon chromosome
Sequence Protein sequence (95 a.a.); Nucleotide sequence (285 bp)
Description Tsi6
Reference
-
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) PA0092 (Tsi6)
Coordinates (Strand) 113022..113306 (-)
NCBI ID 15595290
RefSeq NC_002516
Uniprot ID TSI6_PSEAE
KEGG ID pae:PA0092
PDB ID 4ZUY, 4ZV0, 5JTK
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Tsi6 PF18660.3 1e-31 2..83
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-94 MTPIEYIDRALALVVDRLARYPGYEVLLSAEKQLQYIRSVLLDRSLDRSALHRLTLGSIAVKEFDETDPELSRALKDAYYVGIRTGRGLKVDLP


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9934 - -


  Protein sequence: 95 a.a.    .

>IMU00273 NC_002516:c113306-113022 [Pseudomonas aeruginosa PAO1]
MTPIEYIDRALALVVDRLARYPGYEVLLSAEKQLQYIRSVLLDRSLDRSALHRLTLGSIAVKEFDETDPELSRALKDAYY
VGIRTGRGLKVDLP*

  Nucleotide sequence: 285 bp    .

>IMU00273 NC_002516:c113306-113022 [Pseudomonas aeruginosa PAO1]
ATGACACCCATCGAATACATCGACCGCGCTCTGGCGCTGGTCGTCGACCGGCTGGCCCGCTATCCGGGATACGAGGTCCT
GCTGTCTGCGGAAAAGCAATTGCAGTACATCAGGTCCGTCCTGCTCGACCGCAGCCTGGATCGTTCCGCACTGCACCGGT
TGACCCTCGGCAGCATCGCCGTGAAGGAATTCGACGAAACCGACCCGGAACTCTCCAGGGCCCTCAAGGACGCCTACTAC
GTCGGTATACGCACTGGCCGCGGCCTGAAGGTCGATCTGCCCTGA