Detailed information of immunity protein
Summary
| Immunity protein ID | IMU00273  |
| Cognate effector | EFF01035 |
| Related T6SS (Type) | T6SS00003 (Type i3) |
| Strain | Pseudomonas aeruginosa PAO1 |
| Replicon | chromosome |
| Sequence | Protein sequence (95 a.a.); Nucleotide sequence (285 bp) |
| Description | Tsi6 |
| Reference | - |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | PA0092 (Tsi6) |
| Coordinates (Strand) | 113022..113306 (-) |
| NCBI ID | 15595290 |
| RefSeq | NC_002516 |
| Uniprot ID | TSI6_PSEAE |
| KEGG ID | pae:PA0092 |
| PDB ID | 4ZUY, 4ZV0, 5JTK |
Pfam domain hit(s)
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Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| Tsi6 | PF18660.3 | 1e-31 | 2..83 |
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Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
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Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-94 | MTPIEYIDRALALVVDRLARYPGYEVLLSAEKQLQYIRSVLLDRSLDRSALHRLTLGSIAVKEFDETDPELSRALKDAYYVGIRTGRGLKVDLP |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
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Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9934 | - | - |
Protein sequence: 95 a.a. .
>IMU00273 NC_002516:c113306-113022 [Pseudomonas aeruginosa PAO1]
MTPIEYIDRALALVVDRLARYPGYEVLLSAEKQLQYIRSVLLDRSLDRSALHRLTLGSIAVKEFDETDPELSRALKDAYY
VGIRTGRGLKVDLP*
MTPIEYIDRALALVVDRLARYPGYEVLLSAEKQLQYIRSVLLDRSLDRSALHRLTLGSIAVKEFDETDPELSRALKDAYY
VGIRTGRGLKVDLP*
Nucleotide sequence: 285 bp .
>IMU00273 NC_002516:c113306-113022 [Pseudomonas aeruginosa PAO1]
ATGACACCCATCGAATACATCGACCGCGCTCTGGCGCTGGTCGTCGACCGGCTGGCCCGCTATCCGGGATACGAGGTCCT
GCTGTCTGCGGAAAAGCAATTGCAGTACATCAGGTCCGTCCTGCTCGACCGCAGCCTGGATCGTTCCGCACTGCACCGGT
TGACCCTCGGCAGCATCGCCGTGAAGGAATTCGACGAAACCGACCCGGAACTCTCCAGGGCCCTCAAGGACGCCTACTAC
GTCGGTATACGCACTGGCCGCGGCCTGAAGGTCGATCTGCCCTGA
ATGACACCCATCGAATACATCGACCGCGCTCTGGCGCTGGTCGTCGACCGGCTGGCCCGCTATCCGGGATACGAGGTCCT
GCTGTCTGCGGAAAAGCAATTGCAGTACATCAGGTCCGTCCTGCTCGACCGCAGCCTGGATCGTTCCGCACTGCACCGGT
TGACCCTCGGCAGCATCGCCGTGAAGGAATTCGACGAAACCGACCCGGAACTCTCCAGGGCCCTCAAGGACGCCTACTAC
GTCGGTATACGCACTGGCCGCGGCCTGAAGGTCGATCTGCCCTGA